PDBsum entry 3vjb Go to PDB code:  Pore analysis for: 3vjb calculated with MOLE 2.0 PDB id 3vjb Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.53 1.55 31.7 -1.92 -0.43 19.3 82 3 1 4 1 2 0 0   2 3.23 3.33 32.1 -2.40 -0.47 29.5 84 5 5 4 0 1 2 0   3 3.05 3.33 45.4 -2.32 -0.50 26.2 84 7 5 5 1 1 2 0   4 2.59 3.02 46.6 -2.40 -0.37 29.2 83 4 4 5 0 3 2 0   5 1.73 2.92 48.3 -1.10 -0.19 17.0 82 3 3 8 6 2 0 0   6 2.61 3.15 48.5 -2.32 -0.44 26.8 82 4 4 5 0 2 2 0   7 1.74 3.67 60.2 -1.41 -0.40 18.5 87 5 5 7 3 2 2 0   8 1.73 3.66 67.1 -2.23 -0.51 25.2 85 6 5 7 3 3 2 0   9 1.45 2.64 85.5 -2.28 -0.55 25.4 81 5 8 6 2 2 2 0   10 1.47 2.67 89.4 -1.98 -0.48 23.2 81 4 8 8 2 3 2 0   11 1.21 1.27 91.5 -1.63 -0.41 24.9 77 8 7 3 5 3 0 0   12 1.37 2.57 103.6 -2.23 -0.61 23.5 81 9 8 7 3 1 2 0   13 1.64 1.80 68.6 -2.17 -0.37 30.8 78 5 6 4 2 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.