PDBsum entry 3vjb Go to PDB code:  Tunnel analysis for: 3vjb calculated with MOLE 2.0 PDB id 3vjb Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.22 1.22 20.4 -1.07 -0.25 11.6 87 1 2 3 4 1 0 0   2 1.59 1.69 32.2 -0.50 -0.04 15.1 79 4 4 5 5 3 0 1   3 1.58 1.66 37.9 -0.90 -0.11 18.4 75 3 4 4 7 5 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.