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PDBsum entry 3v9u
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Tunnel analysis for: 3v9u calculated with  MOLE 2.0
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PDB id
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3v9u
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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4 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.50 |
1.60 |
18.7 |
-0.94 |
-0.34 |
19.7 |
86 |
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2 |
2 |
2 |
2 |
2 |
0 |
0 |
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DA 5 G DA 6 G DT 7 G
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2 |
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1.29 |
1.30 |
30.6 |
-0.55 |
-0.28 |
7.6 |
82 |
3 |
2 |
2 |
3 |
4 |
1 |
0 |
DA 5 F DA 6 F
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3 |
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1.43 |
1.46 |
20.1 |
-0.62 |
-0.23 |
18.4 |
87 |
2 |
2 |
1 |
3 |
1 |
0 |
0 |
DA 5 F DA 6 F DT 7 F
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4 |
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1.42 |
1.65 |
31.2 |
-0.95 |
-0.28 |
20.3 |
89 |
3 |
2 |
3 |
4 |
1 |
0 |
0 |
DA 5 F DA 6 F DT 7 F
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5 |
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1.21 |
2.63 |
22.0 |
1.01 |
0.19 |
7.6 |
88 |
1 |
0 |
1 |
10 |
1 |
0 |
0 |
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6 |
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1.21 |
1.99 |
15.4 |
0.97 |
0.06 |
6.4 |
91 |
1 |
1 |
0 |
3 |
0 |
0 |
0 |
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7 |
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1.20 |
2.00 |
15.6 |
1.02 |
0.18 |
8.8 |
91 |
1 |
1 |
0 |
3 |
0 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program