PDBsum entry 3v6t Go to PDB code:  Pore analysis for: 3v6t calculated with MOLE 2.0 PDB id 3v6t Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.39 2.39 30.0 -1.17 -0.78 9.1 78 2 0 2 0 0 0 0  DT 4 G DT 5 G DT 6 G DA 7 G DT 8 G DC 9 G DC 11 G DT 12 G DC 13 G DT 14 G DG -9 H DA -8 H DT - 7 H DA -6 H DA -5 H DA -4 H DG -3 H DG -2 H DG - 1 H DA 0 H DC 13 I DT 14 I 2 2.19 2.19 30.1 -2.12 -0.67 19.6 94 1 2 4 1 0 0 0  DA -14 H DG -13 H DA -12 H DG -11 H DA -10 H 3 2.12 2.12 37.9 -1.25 -0.80 3.0 97 0 0 5 2 0 0 0  DA -12 H DG -11 H DA -10 H 4 2.31 2.63 42.1 -1.73 -0.78 6.9 81 2 2 6 0 0 3 0  DC 13 I DG -9 J DA -8 J 5 2.41 2.41 48.8 -1.59 -0.78 14.7 78 4 3 4 0 0 0 0  DT 4 G DT 5 G DT 6 G DA 7 G DT 8 G DA -5 H DA - 4 H DG -3 H DG -2 H DG -1 H DA 0 H 6 1.88 1.86 66.0 -1.62 -0.65 19.8 77 6 4 3 2 0 1 0  DC 11 G DT 12 G DC 13 G DT 14 G DA -14 H DG - 9 H DA -8 H DT -7 H DA -6 H DA -5 H 7 2.40 2.40 100.0 -1.20 -0.73 10.8 85 6 3 10 5 0 0 0  DT 4 G DT 5 G DT 6 G DA 7 G DT 8 G DC 9 G DG - 11 H DA -10 H DG -9 H DA -8 H DT -7 H DA -6 H DA - 5 H DA -4 H DG -3 H DG -2 H DG -1 H DA 0 H Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.