PDBsum entry 3v5k Go to PDB code:  Pore analysis for: 3v5k calculated with MOLE 2.0 PDB id 3v5k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   13 pores, coloured by radius 13 pores, coloured by radius 13 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.18 42.1 -1.72 -0.39 22.2 78 5 6 3 1 3 0 0   2 1.76 1.91 49.1 -2.55 -0.76 28.6 86 6 7 4 1 0 1 0   3 2.49 2.76 53.2 -2.35 -0.61 25.8 77 6 4 1 0 3 2 0   4 1.20 1.20 58.6 -1.91 -0.47 22.7 81 5 9 5 1 4 1 0   5 1.96 4.02 62.0 -1.94 -0.39 22.0 79 8 6 4 2 5 2 0   6 2.47 2.56 62.0 -2.10 -0.46 23.3 78 7 6 2 1 4 2 0   7 1.80 1.79 62.7 -2.13 -0.55 23.8 80 9 8 4 2 2 1 0   8 1.20 1.18 76.5 -2.28 -0.75 28.9 88 6 11 6 1 1 0 0   9 1.98 3.30 100.7 -2.56 -0.72 30.4 86 11 12 7 2 1 1 0   10 1.98 2.18 108.3 -1.91 -0.37 24.2 77 12 11 5 4 8 2 0   11 2.13 4.47 137.8 -2.29 -0.55 28.7 82 10 16 7 4 6 2 0   12 1.93 3.04 161.5 -2.03 -0.45 25.6 81 16 12 6 3 6 3 0   13 1.28 2.78 191.0 -2.32 -0.59 28.9 85 15 17 8 3 4 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.