PDBsum entry 3t5k Go to PDB code:  Pore analysis for: 3t5k calculated with MOLE 2.0 PDB id 3t5k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   9 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.99 2.06 28.2 -0.44 -0.16 11.8 86 3 0 1 4 0 0 0  DA 403 B DT 404 B HN0 405 B DG 406 B DT 512 C DC 513 C 2 1.94 2.01 29.9 -2.35 -0.51 23.0 78 4 1 2 2 2 0 0  DTP 600 A DT 404 B HN0 405 B DG 406 B DA 407 B DG 509 C DA 510 C DT 511 C DT 512 C DC 513 C DC 514 C 3 1.82 1.95 38.2 0.10 -0.09 13.9 92 2 1 0 4 0 0 0  DT 404 B HN0 405 B DG 406 B DG 509 C DA 510 C DT 511 C DT 512 C DC 513 C 4 1.98 2.07 42.6 -0.28 0.29 23.8 91 6 0 1 5 0 0 0  DT 404 B HN0 405 B DG 406 B DA 407 B DA 408 B DT 409 B DC 410 B DA 506 C DG 508 C DG 509 C DA 510 C 5 2.14 2.39 43.2 -0.28 0.28 21.1 87 6 0 2 4 0 0 0  DA 403 B DT 404 B HN0 405 B DG 406 B DA 407 B DA 408 B DT 409 B DC 410 B DA 506 C DG 508 C DG 509 C DA 510 C DT 512 C DC 513 C 6 1.68 1.89 49.5 -1.82 -0.40 18.6 80 6 2 3 2 3 0 0  DTP 600 A DA 403 B HN0 405 B DA 407 B DC 513 C DC 514 C 7 2.31 2.46 56.1 -2.11 -0.56 20.9 78 7 2 3 1 3 0 0  HN0 405 B DG 406 B DA 407 B DA 408 B DT 409 B DC 410 B DA 506 C DT 512 C DC 513 C DC 514 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.