PDBsum entry 3t5k Go to PDB code:  Tunnel analysis for: 3t5k calculated with MOLE 2.0 PDB id 3t5k Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   0 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.64 1.89 23.6 1.31 0.61 11.9 89 2 0 1 4 0 0 0  DA 403 B DT 404 B HN0 405 B DG 406 B DA 407 B DT 512 C DC 513 C 2 1.72 1.76 24.4 -1.49 0.06 32.2 90 4 0 1 2 0 0 0  DA 407 B DA 408 B DT 409 B DC 410 B DG 505 C DA 506 C DG 508 C DG 509 C DA 510 C 3 1.67 1.84 32.5 0.63 0.41 16.1 93 3 0 0 5 0 0 0  DT 404 B HN0 405 B DG 406 B DA 407 B 4 1.71 1.91 46.2 -0.62 0.05 19.2 89 6 0 2 6 1 0 0  DTP 600 A DT 404 B HN0 405 B DG 406 B DA 407 B DC 514 C 5 1.69 1.94 49.4 -1.29 -0.15 21.1 85 6 1 2 5 1 0 0  DTP 600 A DT 404 B HN0 405 B DG 406 B DA 407 B DC 514 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.