PDBsum entry 3s1q Go to PDB code:  Pore analysis for: 3s1q calculated with MOLE 2.0 PDB id 3s1q Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   29 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.71 4.39 33.5 -2.07 -0.60 34.1 84 7 7 1 6 0 0 0   2 3.71 4.38 37.9 -2.17 -0.66 32.6 86 4 7 4 5 0 1 0   3 1.68 3.01 54.4 -1.56 -0.44 22.6 83 6 4 3 6 1 1 0   4 3.50 3.70 59.6 -1.62 -0.25 26.8 83 7 2 1 5 0 2 0  DA 6 R DA 18 T DG 26 T DA 27 T DT 28 T 5 1.82 3.10 62.4 -1.14 -0.24 20.0 86 8 3 4 8 0 2 0   6 1.33 2.20 65.6 -1.73 -0.17 21.8 72 7 3 1 4 3 5 0   7 2.62 2.80 79.9 -1.73 -0.37 24.6 81 9 9 2 5 2 0 0   8 1.41 1.42 82.0 -1.85 -0.65 22.0 81 6 8 5 2 2 1 1   9 1.94 1.94 83.8 -1.42 -0.42 21.5 86 13 9 6 8 1 1 0   10 1.88 3.62 90.4 -1.34 -0.14 18.8 83 8 7 11 8 5 2 0   11 1.40 1.42 98.7 -1.64 -0.55 21.9 80 10 8 5 4 2 1 1   12 1.65 1.67 97.8 -1.48 -0.34 22.8 83 9 9 2 9 2 4 0   13 1.30 1.47 108.1 -0.82 -0.27 21.2 86 7 7 3 8 1 0 0  DA 6 R DC 16 T DG 17 T DA 18 T 14 1.68 1.73 117.0 -1.81 -0.60 28.0 86 11 17 4 8 0 1 0   15 1.41 2.87 123.9 -1.54 -0.48 25.7 86 10 16 5 11 1 1 0   16 1.36 1.56 127.4 -1.65 -0.35 24.2 83 14 7 9 11 3 2 0  DA 6 R DA 18 T DT 28 T 17 1.92 1.90 126.5 -1.33 -0.31 21.2 85 11 13 8 10 3 1 0   18 1.40 1.51 138.0 -1.55 -0.34 23.9 81 15 11 5 10 2 2 0   19 1.24 1.45 207.1 -1.67 -0.39 24.0 83 20 9 7 10 4 2 1  DA 6 R DA 18 T DT 28 T Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.