PDBsum entry 3py8 Go to PDB code:  Pore analysis for: 3py8 calculated with MOLE 2.0 PDB id 3py8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 4.09 4.09 29.3 -1.22 -0.65 17.1 73 3 3 0 1 0 1 0  MN 3 B DA 102 B DC 103 B DC 104 B DA 105 B DC 207 C DG 208 C DC 209 C DC 210 C DG 211 C 2 3.80 4.35 33.0 -1.87 -0.73 26.3 81 4 3 0 1 1 0 0  MN 3 B DC 109 B DG 110 B DC 111 B MN 4 C DG 204 C DG 205 C DG 206 C DC 207 C DG 208 C 3 1.34 1.32 41.8 -2.02 -0.75 20.3 86 4 3 2 0 0 1 0  DA 102 B DA 105 B DC 106 B DG 107 B DG 108 B DC 210 C DG 211 C DT 212 C DG 213 C DG 214 C 4 2.49 2.50 44.4 -1.96 -0.35 28.5 80 7 5 0 3 2 1 0  MG 2 A DCT 113 A DC 111 B DOC 112 B DG 204 C DG 205 C 5 1.21 1.36 45.1 -1.93 -0.53 26.7 83 6 3 0 3 1 0 0  DA 105 B DC 106 B DG 107 B DG 108 B DC 109 B DG 110 B DC 210 C DG 211 C DT 212 C DG 213 C DG 214 C 6 2.50 2.58 50.8 -2.39 -0.53 31.1 79 8 6 0 1 1 1 0  MG 2 A DCT 113 A MN 3 B DC 109 B DG 110 B DC 111 B DOC 112 B MN 4 C DG 204 C DG 205 C DG 206 C DC 207 C DG 208 C Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.