PDBsum entry 3py8 Go to PDB code:  Tunnel analysis for: 3py8 calculated with MOLE 2.0 PDB id 3py8 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 5 tunnels, coloured by tunnel radius 5 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.60 1.61 36.0 -1.81 -0.55 25.1 79 6 4 1 3 1 0 0  DCT 113 A MN 833 A 2 1.60 1.61 37.8 -2.14 -0.49 27.4 78 6 5 1 4 1 1 0  MG 2 A DCT 113 A DC 111 B DOC 112 B 3 1.60 1.61 43.2 -1.78 -0.38 25.2 78 6 3 1 5 2 0 0  DCT 113 A DC 111 B DOC 112 B DG 204 C DG 205 C 4 1.60 1.61 49.7 -1.88 -0.53 24.6 83 6 4 2 4 1 0 0  DCT 113 A DC 109 B DG 110 B DC 111 B DOC 112 B DA 203 C DG 204 C DG 205 C 5 1.15 2.35 16.7 1.38 0.27 3.0 70 1 1 0 5 1 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.