PDBsum entry 3pjs

Pore analysis for: 3pjs calculated with

MOLE 2.0

PDB id

3pjs

Pores calculated on whole structure

Pores calculated excluding ligands

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17 pores, coloured by radius

17 pores, coloured by radius

17 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.33

2.34

33.0

-0.02

-0.03

10.6

85

0

3

5

5

4

0

0

2

1.19

1.30

37.1

-0.55

-0.41

14.2

81

3

4

4

4

0

3

0

3

2.35

2.56

39.3

1.67

0.23

3.4

86

0

1

4

12

1

0

0

4

2.46

2.81

46.8

-0.74

-0.07

12.5

82

4

3

0

6

5

0

0

5

1.18

3.22

52.5

-1.08

-0.55

12.8

84

3

4

7

4

0

3

0

6

2.65

2.77

55.4

-0.21

-0.13

11.4

83

0

7

7

11

6

0

0

7

1.30

1.35

62.9

-0.93

-0.54

11.2

87

4

1

4

3

1

4

0

8

2.33

2.34

66.5

-0.25

-0.18

14.0

86

4

4

4

7

4

0

0

9

2.51

2.80

88.9

-0.40

-0.24

13.2

86

4

7

7

13

6

0

0

10

1.32

1.35

93.0

-1.27

-0.56

13.3

83

3

6

6

3

1

3

0

11

1.29

1.35

96.2

-1.25

-0.64

14.1

84

5

6

8

1

3

4

0

12

1.31

1.34

99.2

-0.94

-0.48

10.3

85

3

5

7

5

2

3

0

13

1.20

1.25

110.9

-1.05

-0.61

11.1

91

5

4

15

4

2

2

0

14

1.34

1.35

111.0

-1.25

-0.54

12.8

83

3

5

7

4

1

4

0

15

1.81

1.83

137.2

-0.60

0.15

10.1

73

3

2

4

15

5

3

0

16

1.60

3.56

55.1

-0.70

-0.45

12.7

87

1

2

3

2

1

2

0

17

1.21

1.30

116.5

-1.35

0.04

14.7

77

4

2

5

2

6

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.