PDBsum entry 3pjs Go to PDB code:  Tunnel analysis for: 3pjs calculated with MOLE 2.0 PDB id 3pjs Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.45 22.7 0.44 0.16 3.1 77 1 0 2 4 2 0 2   2 1.17 2.37 28.5 -0.45 -0.50 3.8 96 1 0 7 5 0 0 0   3 1.16 2.46 37.4 0.41 -0.22 5.2 89 1 2 7 6 0 2 0   4 1.16 2.03 16.4 1.00 0.04 2.0 80 0 0 2 3 1 0 2   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.