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PDBsum entry 3pip
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 3pip calculated with MOLE 2.0 PDB id
3pip
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.92 2.92 77.6 -0.49 -0.66 5.1 90 1 0 2 1 1 0 0  U 34 X G 35 X C 65 X U 66 X G 88 X G 90 X C 104 X
G 105 X U 302 X C 303 X A 304 X A 305 X G 306 X U
350 X A 351 X G 352 X G 353 X C 354 X G 355 X A
451 X G 452 X U 467 X A 468 X A 483 X A 502 X A
518 X A 1334 X
2 2.70 2.70 79.2 -0.62 -0.68 8.2 83 3 1 2 3 0 0 0  U 34 X G 35 X U 86 X G 88 X A 89 X G 90 X A 91 X
U 92 X A 93 X C 94 X G 95 X U 97 X C 104 X G 105
X U 302 X C 303 X A 304 X A 305 X G 306 X U 350 X
A 351 X G 352 X G 353 X C 354 X G 355 X A 451 X G
452 X A 490 X
3 3.06 3.06 103.2 -0.95 -0.63 12.4 87 5 1 1 2 0 0 0  A 123 X A 125 X C 126 X A 471 X C 472 X A 502 X A
518 X C 1319 X A 1320 X A 1321 X G 1324 X U 1325
X G 1332 X A 1334 X A 1335 X C 1347 X G 1359 X G
1360 X A 1391 X U 1392 X G 1393 X G 1394 X C 1396
X A 1397 X G 1398 X C 1399 X U 1409 X C 1572 X G
1573 X C 1616 X G 1617 X U 1639 X C 1640 X
4 2.81 2.81 117.1 -0.62 -0.78 5.7 88 1 1 1 0 1 0 0  U 40 X U 302 X C 303 X A 304 X A 335 X U 350 X A
351 X G 352 X G 353 X C 354 X G 355 X A 451 X G
452 X U 453 X G 600 X A 601 X C 602 X U 604 X G
605 X A 606 X A 619 X G 620 X A 624 X A 625 X C
664 X U 667 X G 669 X U 670 X A 671 X C 672 X G
673 X U 674 X C 675 X C 947 X C 948 X
5 1.96 1.91 118.7 -0.68 -0.54 10.7 74 6 2 0 5 1 1 0  C 20 X A 21 X C 22 X G 23 X G 24 X U 25 X G 26 X
G 27 X A 483 X A 502 X A 515 X G 516 X A 518 X C
519 X G 522 X A 523 X A 524 X C 545 X A 546 X G
558 X C 559 X G 560 X U 561 X G 562 X U 1005 X C
1006 X C 1230 X A 1231 X U 1232 X A 1233 X U 1247
X G 1273 X A 1334 X
6 1.34 1.40 127.2 -0.41 -0.46 10.0 80 4 1 1 4 2 0 0  G 35 X G 47 X U 49 X G 50 X A 52 X C 65 X U 66 X
G 67 X C 68 X C 77 X C 78 X G 88 X G 90 X C 104 X
G 105 X G 106 X G 107 X G 108 X A 109 X G 111 X C
358 X C 449 X C 450 X U 467 X A 468 X A 483 X A
502 X A 518 X A 1334 X
7 1.35 1.63 128.7 -0.55 -0.62 7.9 86 3 1 3 3 1 0 0  G 47 X U 49 X G 50 X A 52 X G 67 X C 68 X C 77 X
C 78 X C 104 X G 105 X G 106 X G 107 X G 108 X A
109 X G 111 X U 302 X C 303 X A 304 X A 305 X G
306 X U 350 X A 351 X G 352 X G 353 X C 354 X G
355 X C 358 X C 449 X C 450 X A 451 X G 452 X
8 2.81 2.81 136.1 -0.74 -0.72 7.4 95 3 1 5 1 0 0 0  G 35 X C 65 X U 66 X C 104 X G 105 X A 123 X A
125 X C 126 X U 302 X C 303 X A 304 X A 305 X G
306 X U 350 X A 351 X G 352 X G 353 X C 354 X G
355 X C 450 X A 451 X G 452 X U 467 X A 468 X G
469 X U 470 X A 471 X C 1319 X A 1320 X A 1321 X
G 1324 X G 1359 X G 1360 X A 1391 X U 1392 X G
1393 X G 1394 X C 1396 X A 1397 X G 1398 X C 1399
X U 1409 X C 1572 X G 1573 X C 1616 X G 1617 X U
1639 X C 1640 X
9 2.34 2.34 136.3 -0.54 -0.77 4.6 88 1 1 1 0 1 0 0  U 40 X A 181 X G 182 X U 183 X A 202 X G 203 X A
204 X A 205 X U 212 X C 213 X C 214 X G 215 X A
221 X G 231 X A 232 X A 233 X U 302 X C 303 X A
304 X A 335 X U 350 X A 351 X G 352 X G 353 X C
354 X G 355 X U 396 X U 397 X G 424 X C 446 X A
451 X G 452 X U 453 X A 599 X G 600 X A 619 X G
620 X A 624 X A 625 X A 681 X U 2385 X U 2387 X
10 1.87 1.87 152.5 -0.79 -0.57 10.8 77 7 2 0 2 1 1 0  C 545 X A 546 X G 558 X C 559 X G 560 X U 561 X A
606 X C 607 X G 608 X C 664 X U 667 X G 669 X G
854 X G 855 X A 856 X C 947 X C 948 X U 1005 X C
1006 X G 1207 X A 1208 X G 1209 X C 1210 X G 1211
X U 1212 X U 1213 X C 1214 X G 1228 X U 1232 X A
1233 X C 1234 X G 1241 X A 1242 X C 1253 X G 1254
X U 1257 X G 1258 X A 1259 X
11 2.45 2.45 155.0 -0.54 -0.63 6.8 81 5 0 1 2 2 0 0  G 35 X G 38 X G 53 X C 65 X U 66 X G 67 X G 88 X
G 90 X A 158 X A 159 X C 160 X A 181 X G 182 X U
183 X A 184 X A 202 X G 203 X A 204 X A 205 X U
212 X C 213 X C 214 X A 221 X G 231 X A 232 X A
233 X U 396 X U 397 X G 424 X C 446 X U 447 X C
448 X C 449 X C 450 X G 464 X U 467 X A 468 X A
483 X A 502 X A 518 X A 681 X G 1332 X A 1334 X U
2385 X U 2387 X
12 1.72 1.72 154.3 -0.70 -0.62 9.2 80 7 2 1 2 1 0 0  C 32 X C 33 X U 34 X U 302 X C 303 X A 304 X A
305 X A 336 X G 337 X G 349 X U 350 X A 351 X G
352 X G 353 X C 354 X G 355 X A 451 X G 452 X U
453 X G 454 X G 458 X C 545 X A 546 X G 558 X C
559 X G 560 X U 561 X U 1005 X C 1006 X U 1212 X
U 1213 X C 1214 X A 1215 X G 1216 X U 1217 X G
1228 X U 1232 X A 1233 X C 1234 X G 1241 X A 1242
X C 1252 X C 1253 X G 1254 X
13 2.48 2.48 157.8 -0.60 -0.66 8.0 81 7 1 2 4 1 0 0  U 34 X G 35 X G 38 X G 53 X U 66 X G 67 X U 86 X
G 88 X A 89 X G 90 X A 91 X U 92 X A 93 X C 94 X
G 95 X U 97 X C 104 X A 158 X A 159 X C 160 X A
181 X G 182 X U 183 X A 184 X A 202 X G 203 X A
204 X A 205 X U 212 X C 213 X C 214 X A 221 X G
231 X A 232 X A 233 X U 396 X U 397 X G 424 X C
446 X U 447 X C 448 X C 449 X C 450 X G 464 X U
467 X A 490 X A 681 X U 2385 X U 2387 X
14 3.10 3.09 163.4 -0.51 -0.64 6.8 84 5 0 2 2 2 0 0  G 35 X G 38 X U 40 X G 53 X C 65 X U 66 X G 67 X
G 88 X G 90 X A 158 X A 159 X C 160 X A 181 X U
183 X A 184 X C 214 X G 215 X C 446 X U 447 X C
448 X C 449 X C 450 X G 464 X U 467 X A 468 X A
483 X A 502 X A 518 X A 599 X G 600 X A 601 X C
602 X U 604 X G 605 X A 606 X A 619 X C 664 X U
667 X G 669 X U 670 X A 671 X C 672 X G 673 X U
674 X C 675 X A 681 X C 947 X C 948 X G 1332 X A
1334 X
15 3.06 3.06 166.2 -0.61 -0.67 8.1 83 7 1 3 4 1 0 0  U 34 X G 35 X G 38 X U 40 X G 53 X U 66 X G 67 X
U 86 X G 88 X A 89 X G 90 X A 91 X U 92 X A 93 X
C 94 X G 95 X U 97 X C 104 X A 158 X A 159 X C
160 X A 181 X U 183 X A 184 X C 214 X G 215 X C
446 X U 447 X C 448 X C 449 X C 450 X G 464 X U
467 X A 490 X A 599 X G 600 X A 601 X C 602 X U
604 X G 605 X A 606 X A 619 X C 664 X U 667 X G
669 X U 670 X A 671 X C 672 X G 673 X U 674 X C
675 X A 681 X C 947 X C 948 X
16 1.39 2.01 170.9 -0.73 -0.62 9.9 85 7 1 4 4 1 0 0  G 47 X U 49 X G 50 X A 52 X G 53 X G 54 X A 55 X
C 56 X G 57 X C 64 X C 65 X U 66 X G 67 X C 68 X
C 77 X C 78 X G 106 X G 107 X G 108 X A 109 X G
111 X A 123 X A 125 X C 126 X C 358 X C 449 X C
1319 X A 1320 X A 1321 X G 1324 X G 1359 X G 1360
X A 1391 X U 1392 X G 1393 X G 1394 X C 1396 X A
1397 X G 1398 X C 1399 X U 1409 X C 1572 X G 1573
X C 1616 X G 1617 X U 1639 X C 1640 X
17 1.38 2.02 185.8 -0.57 -0.61 9.8 82 5 4 1 5 1 0 0  U 49 X G 50 X C 77 X C 78 X G 107 X G 108 X A 109
X U 110 X G 111 X U 112 X C 113 X C 128 X A 129 X
C 130 X G 138 X A 139 X G 140 X G 141 X U 142 X C
358 X A 1362 X C 1363 X C 1364 X U 1365 X G 1387
X C 1388 X G 1419 X A 1420 X U 1434 X G 1435 X G
1436 X A 1437 X G 1438 X G 1439 X A 1516 X C 1517
X A 1587 X A 1588 X G 1589 X C 1590 X U 1612 X C
1614 X A 2191 X MG 2889 X
18 1.38 1.60 193.4 -0.54 -0.61 7.5 81 6 1 2 4 2 0 0  G 38 X G 47 X U 49 X G 50 X A 52 X G 53 X G 67 X
C 68 X C 77 X C 78 X G 106 X G 107 X G 108 X A
109 X G 111 X A 158 X A 159 X C 160 X A 181 X G
182 X U 183 X A 184 X A 202 X G 203 X A 204 X A
205 X U 212 X C 213 X C 214 X A 221 X G 231 X A
232 X A 233 X C 358 X U 396 X U 397 X G 424 X C
446 X U 447 X C 448 X C 449 X G 464 X A 681 X U
2385 X U 2387 X
19 1.26 1.44 198.4 -0.72 -0.69 7.8 83 7 2 3 2 1 1 0  A 10 X G 11 X U 12 X A 13 X A 14 X G 531 X A 532
X C 533 X U 534 X G 548 X G 549 X C 550 X G 558 X
C 559 X G 1668 X A 1669 X G 1670 X C 1726 X C
1991 X G 2603 X G 2604 X C 2669 X C 2670 X C 2671
X U 2672 X G 2673 X C 2674 X U 2675 X G 2676 X U
2677 X A 2684 X A 2685 X C 2686 X G 2687 X A 2780
X G 2781 X C 2788 X U 2789 X C 2790 X C 2791 X C
2792 X G 2793 X G 2794 X G 2797 X C 2800 X A 2801
X G 2813 X G 2814 X G 2846 X G 2847 X C 2864 X MG
2952 X
20 1.38 2.02 201.8 -0.57 -0.63 7.9 83 7 1 3 4 2 0 0  G 38 X U 40 X G 47 X U 49 X G 50 X A 52 X G 53 X
G 67 X C 68 X C 77 X C 78 X G 106 X G 107 X G 108
X A 109 X G 111 X A 158 X A 159 X C 160 X A 181 X
U 183 X A 184 X C 214 X G 215 X C 358 X C 446 X U
447 X C 448 X C 449 X G 464 X A 599 X G 600 X A
601 X C 602 X U 604 X G 605 X A 606 X A 619 X C
664 X U 667 X G 669 X U 670 X A 671 X C 672 X G
673 X U 674 X C 675 X A 681 X C 947 X C 948 X
21 1.72 1.72 214.4 -0.81 -0.63 9.6 80 9 3 1 2 2 0 0  U 40 X A 181 X G 182 X U 183 X A 202 X G 203 X A
204 X A 205 X U 212 X C 213 X C 214 X G 215 X A
221 X G 231 X A 232 X A 233 X A 336 X U 396 X U
397 X G 424 X C 446 X U 453 X G 454 X C 545 X A
546 X G 558 X C 559 X G 560 X U 561 X A 599 X G
600 X A 619 X G 620 X A 624 X A 625 X A 626 X A
681 X U 1005 X C 1006 X U 1212 X U 1213 X C 1214
X A 1215 X G 1216 X U 1217 X C 1218 X G 1220 X G
1228 X U 1232 X A 1233 X C 1234 X G 1241 X A 1242
X C 1252 X C 1253 X G 1254 X U 2385 X U 2387 X
22 2.07 2.07 221.2 -0.98 -0.77 10.5 80 7 3 1 0 0 0 0  A 539 X G 540 X G 543 X U 544 X C 545 X A 546 X U
547 X G 548 X G 558 X C 559 X G 560 X U 561 X G
562 X U 563 X U 564 X U 566 X G 567 X G 568 X C
569 X G 570 X A 990 X A 991 X G 1014 X U 1015 X U
1019 X G 1035 X G 1036 X A 1039 X A 1040 X G 1041
X G 1042 X A 1043 X U 1072 X G 1074 X C 1075 X U
1076 X U 1077 X A 1078 X G 1079 X A 1081 X A 1084
X G 1085 X G 1102 X A 1106 X A 1107 X C 1127 X G
1128 X U 1130 X G 1131 X C 1132 X G 1133 X C 1145
X G 1146 X G 1155 X U 1156 X G 1157 X U 2004 X G
2021 X A 2448 X G 2449 X A 2450 X C 2453 X C 2454
X A 2455 X C 88 Y G 89 Y
23 1.55 1.55 226.8 -0.93 -0.67 11.0 80 6 3 0 3 0 1 0  A 539 X G 540 X G 543 X U 544 X C 545 X A 546 X U
547 X G 548 X G 558 X C 559 X G 560 X U 561 X G
562 X U 563 X U 564 X U 566 X G 567 X G 568 X C
569 X G 570 X A 865 X U 866 X G 867 X A 936 X C
937 X G 938 X C 939 X A 990 X A 991 X A 1012 X G
1013 X G 1014 X U 1015 X U 1019 X G 1036 X C 1145
X G 1146 X G 1155 X U 1156 X G 1157 X A 1158 X U
1159 X U 2004 X G 2021 X G 85 Y A 86 Y C 87 Y C
88 Y G 99 Y G 100 Y A 101 Y
24 1.33 1.54 223.2 -0.60 -0.54 10.0 80 9 3 2 5 2 0 0  C 32 X C 33 X U 34 X G 35 X G 47 X U 49 X G 50 X
A 52 X U 66 X G 67 X C 68 X C 77 X C 78 X C 104 X
G 105 X G 106 X G 107 X G 108 X A 109 X G 111 X A
336 X G 337 X C 358 X C 449 X C 450 X A 451 X G
452 X U 453 X G 454 X G 458 X C 545 X A 546 X G
558 X C 559 X G 560 X U 561 X U 1005 X C 1006 X U
1212 X U 1213 X C 1214 X A 1215 X G 1216 X U 1217
X G 1228 X U 1232 X A 1233 X C 1234 X G 1241 X A
1242 X C 1252 X C 1253 X G 1254 X
25 1.30 2.91 236.5 -0.46 -0.52 8.4 83 6 3 4 10 0 1 0  A 539 X G 540 X G 543 X U 544 X C 545 X A 546 X U
547 X G 548 X G 558 X C 559 X G 560 X U 561 X G
562 X U 563 X U 564 X U 566 X G 567 X G 568 X C
569 X G 570 X A 990 X A 991 X G 1014 X U 1015 X U
1019 X G 1035 X G 1036 X A 1039 X A 1040 X G 1041
X G 1042 X A 1043 X U 1044 X G 1045 X U 1046 X G
1047 X U 1048 X C 1120 X G 1121 X A 1122 X G 1123
X U 1124 X A 1126 X C 1127 X G 1128 X U 1130 X G
1131 X C 1132 X G 1133 X C 1145 X G 1146 X G 1155
X U 1156 X G 1157 X U 2004 X G 2021 X C 88 Y G 89
Y
26 1.37 1.37 247.9 -0.55 -0.67 6.9 73 5 1 1 4 0 3 0  C 32 X C 33 X U 34 X U 86 X G 90 X A 91 X U 92 X
A 93 X C 94 X G 95 X U 97 X G 337 X G 338 X U 339
X A 341 X G 342 X U 486 X G 487 X A 488 X A 489 X
A 490 X C 607 X G 831 X A 832 X A 833 X G 849 X C
850 X C 851 X U 852 X C 853 X G 854 X G 855 X A
856 X G 858 X C 863 X C 864 X A 865 X U 866 X G
867 X U 868 X G 931 X G 932 X G 933 X G 934 X C
935 X A 936 X C 937 X G 938 X C 939 X A 944 X G
945 X A 979 X C 1178 X A 1179 X G 1207 X A 1208 X
G 1209 X C 1210 X G 1211 X U 1212 X U 1213 X C
1214 X A 1215 X G 1216 X U 1217 X G 1251 X C 1252
X C 1253 X G 1254 X U 1257 X G 1258 X A 1259 X A
2248 X G 100 Y A 101 Y
27 2.25 2.25 266.3 -0.84 -0.73 9.3 81 7 3 1 2 0 0 0  A 539 X G 540 X G 543 X U 544 X C 545 X A 546 X U
547 X G 548 X G 558 X C 559 X G 560 X U 561 X G
562 X U 563 X U 564 X U 566 X G 567 X G 568 X C
569 X G 570 X U 866 X G 867 X U 868 X C 869 X C
870 X A 879 X C 880 X A 911 X A 912 X A 913 X C
914 X C 926 X C 927 X G 928 X A 929 X A 930 X A
990 X A 991 X A 1012 X G 1013 X G 1014 X U 1015 X
U 1019 X G 1036 X C 1145 X G 1146 X G 1155 X U
1156 X G 1157 X A 1158 X U 1159 X U 2004 X G 2021
X A 2278 X G 2279 X A 2280 X C 2281 X A 2288 X A
2289 X U 2298 X A 2299 X G 2300 X A 15 Y C 73 Y G
85 Y A 86 Y C 87 Y C 88 Y G 99 Y G 100 Y A 101 Y
28 1.41 1.63 270.3 -0.33 -0.40 10.0 85 9 1 5 16 2 0 0  A 481 X A 482 X A 502 X A 518 X C 803 X G 1272 X
G 1273 X G 1332 X A 1334 X A 1998 X A 2041 X A
2042 X G 2044 X A 2045 X A 2430 X C 2431 X C 2440
X U 2441 X C 2442 X U 2471 X U 2472 X G 2473 X A
2482 X G 2484 X U 2485 X U 2498 X C 2499 X C 2500
X U 2501 X G 2502 X G 2503 X G 2504 X G 2505 X C
2506 X U 2507 X A 2509 X A 2512 X A 2513 X G 2514
X G 2515 X U 2516 X C 2517 X U 2534 X C 2535 X G
2536 X C 2547 X G 2548 X C 2552 X U 2563 X U 2564
X G 2582 X U 2588 X U 2590 X C 2645 X G 2724 X U
2726 X G 2727 X C 2732 X A 2733 X U 2734 X LC2
2881 X LMA 2882 X
29 1.36 1.36 272.0 -0.54 -0.69 6.2 79 4 0 2 2 1 2 0  C 32 X C 33 X U 34 X G 35 X C 65 X U 66 X G 88 X
G 90 X C 104 X A 336 X G 337 X A 451 X G 452 X U
453 X G 454 X G 458 X U 467 X A 468 X A 483 X A
502 X A 518 X C 607 X G 831 X A 832 X A 833 X G
849 X C 850 X C 851 X U 852 X C 853 X G 854 X G
855 X A 856 X G 858 X C 863 X C 864 X A 865 X U
866 X G 867 X U 868 X G 931 X G 932 X G 933 X G
934 X C 935 X A 936 X C 937 X G 938 X C 939 X A
944 X G 945 X A 979 X C 1178 X A 1179 X G 1207 X
A 1208 X G 1209 X C 1210 X G 1211 X U 1212 X U
1213 X C 1214 X A 1215 X G 1216 X U 1217 X C 1252
X C 1253 X G 1254 X U 1257 X G 1258 X A 1259 X G
1332 X A 1334 X A 2248 X G 100 Y A 101 Y
30 1.34 2.07 344.3 -0.57 -0.70 6.8 81 6 1 4 3 1 1 0  C 32 X C 33 X U 34 X G 35 X G 47 X U 49 X G 50 X
A 52 X U 66 X G 67 X C 68 X C 77 X C 78 X C 104 X
G 105 X G 106 X G 107 X G 108 X A 109 X G 111 X A
336 X G 337 X C 358 X C 449 X C 450 X A 451 X G
452 X U 453 X G 454 X G 458 X C 607 X G 831 X A
832 X A 833 X G 849 X C 850 X C 851 X U 852 X C
853 X G 854 X G 855 X A 856 X G 858 X C 863 X C
864 X A 865 X U 866 X G 867 X U 868 X C 869 X C
870 X A 879 X C 880 X A 911 X A 912 X A 913 X C
914 X C 926 X C 927 X G 928 X A 929 X A 930 X G
931 X G 932 X G 933 X G 934 X C 935 X A 944 X G
945 X A 979 X C 1178 X A 1179 X G 1207 X A 1208 X
G 1209 X C 1210 X G 1211 X U 1212 X U 1213 X C
1214 X A 1215 X G 1216 X U 1217 X C 1252 X C 1253
X G 1254 X U 1257 X G 1258 X A 1259 X A 2248 X A
2278 X G 2279 X A 2280 X C 2281 X A 2288 X A 2289
X U 2298 X A 2299 X G 2300 X A 15 Y C 73 Y

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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