PDBsum entry 3pfr Go to PDB code:  Pore analysis for: 3pfr calculated with MOLE 2.0 PDB id 3pfr Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.84 1.84 28.4 -0.59 -0.25 9.9 69 1 1 1 2 2 3 0   2 1.35 1.47 29.9 -0.53 0.14 9.5 80 1 3 3 1 3 0 0   3 1.87 1.95 36.5 -2.42 -0.54 21.7 88 4 2 6 1 1 1 0   4 1.49 1.60 76.9 -1.43 -0.23 17.8 78 6 5 6 2 7 2 0  MSE 291 D 5 1.02 1.44 78.4 -1.09 -0.16 17.2 80 6 3 4 5 6 0 0  MSE 291 B MSE 27 D MSE 291 D MSE 429 D MSE 445 D GKR 457 D 6 1.22 1.32 123.5 -1.00 -0.23 17.4 81 8 7 6 9 5 2 0  MSE 14 A MSE 88 A MSE 291 B 7 1.48 1.58 147.3 -2.04 -0.46 22.6 81 14 8 6 2 4 2 0  MSE 291 D Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.