PDBsum entry 3pfr Go to PDB code:  Tunnel analysis for: 3pfr calculated with MOLE 2.0 PDB id 3pfr Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 11 tunnels, coloured by tunnel radius 11 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.58 1.65 24.6 -0.32 -0.11 6.2 76 2 1 0 3 3 0 0  MSE 25 B MSE 27 B MSE 184 B 2 1.61 1.70 25.2 0.14 0.07 3.8 75 0 1 0 4 4 0 0  MSE 25 B MSE 27 B MSE 429 B MSE 445 B 3 1.38 1.38 15.7 0.93 0.01 7.9 87 1 1 0 4 0 0 0  MSE 88 C 4 1.37 1.37 17.2 0.67 -0.09 9.7 89 1 1 0 5 0 0 0  MSE 88 C 5 1.36 2.04 22.6 2.49 0.52 2.0 85 0 1 0 10 0 0 0  MSE 14 C MSE 88 C 6 1.45 1.45 17.9 0.58 -0.12 9.8 89 1 1 0 5 0 0 0  MSE 88 B 7 1.28 1.38 17.7 0.41 0.00 7.0 82 2 0 1 4 0 1 0   8 1.28 1.39 21.8 -0.17 -0.16 13.1 82 3 2 1 4 0 1 0   9 1.31 1.45 21.0 0.31 0.00 7.8 82 2 1 1 4 0 1 0   10 1.31 1.45 21.9 0.15 -0.08 8.2 81 2 2 1 4 0 2 0   11 1.32 1.44 20.9 -0.04 -0.19 9.5 81 2 3 1 4 0 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.