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PDBsum entry 3ohc
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3ohc calculated with MOLE 2.0 PDB id
3ohc
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.12 3.12 51.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 127 A G 128 A G 129 A i:A U 129 A C 131 A C 132
A U 133 A A 134 A C 135 A C 136 A C 137 A G 138 A
G 139 A A 140 A A 141 A G 142 A C 218 A C 219 A G
220 A C 221 A U 222 A U 223 A C 224 A C 225 A G
226 A G 227 A A 228 A U 229 A G 230 A G 604 A U
605 A
2 2.25 2.25 69.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  G 668 A U 669 A G 670 A G 671 A U 672 A G 673 A G
674 A A 675 A G 709 A G 710 A G 711 A A 712 A G
713 A G 714 A A 715 A G 730 A C 732 A A 733 A A
766 A A 767 A C 770 A G 771 A U 772 A G 773 A U
801 A A 802 A G 803 A U 804 A C 806 A A 807 A C
808 A G 809 A C 810 A MG 1567 A
3 1.35 1.49 76.8 -1.36 -0.74 13.4 79 6 3 1 1 1 1 0  G 664 A A 665 A G 667 A G 668 A U 669 A G 671 A G
730 A C 732 A A 733 A G 734 A C 735 A C 736 A A
737 A C 738 A U 740 A A 766 A A 767 A C 770 A G
771 A U 772 A G 773 A U 801 A A 802 A G 803 A U
804 A C 806 A A 807 A C 808 A G 809 A C 810 A MG
1567 A
4 2.43 2.43 77.0 -0.46 -0.79 4.2 72 1 0 0 0 0 0 0  G 117 A U 118 A A 119 A A 120 A G 122 A C 123 A G
124 A U 125 A G 127 A G 128 A U 129 A A 228 A U
229 A G 230 A G 231 A G 232 A C 233 A C 234 A U
252 A C 267 A C 312 A A 313 A C 314 A G 317 A G
318 A G 319 A C 337 A A 338 A G 604 A U 605 A G
1423 A C 1424 A U 1425 A C 1426 A G 1469 A G 1470
A
5 1.24 1.43 77.9 -1.75 -0.63 18.5 79 8 4 1 2 1 2 0  G 654 A A 655 A C 656 A G 657 A G 658 A G 660 A G
661 A G 662 A A 663 A G 664 A C 736 A A 737 A U
743 A C 744 A C 745 A A 746 A C 747 A C 748 A U
839 A C 849 A U 850 A G 851 A
6 2.24 2.24 105.7 -0.63 -0.70 6.8 77 3 1 0 1 0 1 0  G 654 A A 655 A C 656 A G 657 A G 658 A G 660 A G
661 A G 662 A G 664 A A 665 A G 667 A G 668 A U
669 A G 671 A G 730 A C 732 A A 733 A G 734 A C
735 A C 736 A A 737 A C 738 A U 740 A U 743 A C
744 A C 745 A A 746 A C 747 A C 748 A A 766 A A
767 A C 770 A G 771 A U 772 A G 773 A U 801 A A
802 A G 803 A U 804 A C 806 A A 807 A C 808 A G
809 A C 810 A U 839 A C 849 A U 850 A G 851 A MG
1567 A
7 1.24 2.94 113.5 -0.25 -0.15 14.0 74 9 4 1 9 4 1 0  U 605 A A 608 A A 609 A G 610 A A 611 A C 612 A C
613 A A 614 A C 615 A A 622 A C 624 A G 625 A U
626 A G 627 A G 628 A
8 2.16 2.42 113.8 -0.68 -0.71 7.0 74 4 1 0 1 0 2 0  G 654 A A 655 A C 656 A G 657 A G 658 A G 660 A G
661 A G 662 A G 664 A A 665 A G 667 A G 668 A U
669 A G 670 A G 671 A U 672 A G 673 A G 674 A A
675 A G 709 A G 710 A G 711 A A 712 A G 713 A G
714 A A 715 A A 733 A G 734 A C 735 A C 736 A A
737 A C 738 A U 740 A U 743 A C 744 A C 745 A A
746 A C 747 A C 748 A C 806 A U 839 A C 849 A U
850 A G 851 A
9 2.77 2.77 119.4 -0.71 -0.71 7.7 68 3 1 0 1 1 0 0  A 50 A G 52 A G 117 A C 242 A G 286 A U 287 A A
288 A A 338 A A 572 A A 573 A A 574 A U 884 A G
886 A G 887 A G 888 A A 889 A G 890 A A 907 A A
908 A A 915 A G 916 A C 1402 A C 1403 A C 1404 A
G 1423 A C 1424 A G 1470 A G 1471 A C 1479 A C
1490 A G 1491 A A 1492 A U 1510 A MG 1582 A
10 2.38 2.38 131.5 -0.52 -0.42 6.7 76 4 0 0 2 2 3 0  A 675 A A 676 A U 677 A U 678 A C 679 A G 693 A A
706 A C 707 A C 708 A G 709 A G 710 A G 711 A U
788 A U 789 A A 790 A G 791 A A 792 A C 795 A C
796 A G 926 A G 1401 A C 1402 A C 1403 A C 1404 A
A 1492 A A 1493 A G 1494 A U 1495 A U 1498 A G
1505 A U 1506 A A 1507 A
11 2.51 2.68 135.9 -0.56 -0.52 10.7 80 6 3 0 6 1 1 0  U 5 A G 299 A A 300 A U 565 A G 567 A G 568 A C
569 A A 602 A U 603 A G 604 A U 605 A G 606 A A
608 A G 628 A G 629 A G 630 A G 631 A A 632 A G
654 A A 746 A C 747 A C 748 A G 821 A C 822 A G
823 A C 824 A G 825 A C 826 A U 839 A C 849 A U
850 A G 851 A G 852 A U 870 A U 871 A A 872 A A
873 A G 874 A G 876 A C 877 A G 878 A C 879 A MG
1596 A
12 2.81 2.81 133.9 -0.51 -0.80 4.9 76 2 1 0 0 0 0 0  G 654 A A 655 A U 723 A G 724 A G 727 A A 728 A A
729 A G 731 A U 743 A C 744 A C 745 A A 746 A C
747 A C 748 A G 818 A A 819 A C 822 A G 823 A C
824 A U 839 A C 849 A U 850 A G 851 A G 852 A G
853 A G 854 A G 855 A C 856 A C 857 A C 866 A G
867 A C 868 A G 886 A G 887 A A 915 A G 916 A G
917 A A 918 A A 919 A G 1392 A U 1393 A A 1394 A
C 1402 A C 1403 A C 1404 A C 1490 A G 1491 A A
1492 A C 1509 A U 1510 A U 1528 A G 1529 A
13 2.24 2.24 133.6 -0.82 -0.71 9.1 69 5 1 0 1 1 0 0  A 50 A G 52 A G 117 A C 242 A A 243 A U 244 A G
286 A U 287 A A 288 A A 338 A A 759 A G 760 A G
761 A C 762 A G 763 A C 764 A G 765 A C 770 A G
771 A U 772 A G 773 A U 801 A A 802 A G 803 A U
804 A C 806 A A 807 A C 808 A G 809 A C 810 A C
811 A C 812 A C 882 A G 895 A C 896 A C 897 A G
903 A C 904 A U 905 A G 906 A A 907 A A 908 A G
1423 A C 1424 A G 1470 A G 1471 A C 1479 A MG
1567 A
14 2.22 2.22 150.8 -0.72 -0.74 7.8 70 4 2 0 1 1 0 0  A 50 A G 52 A G 117 A C 242 A A 243 A G 286 A U
287 A A 288 A A 338 A G 576 A G 577 A C 578 A G
579 A U 580 A G 581 A G 654 A A 655 A C 656 A U
743 A C 744 A C 745 A A 746 A C 747 A C 748 A U
757 A G 758 A A 759 A G 760 A G 761 A C 762 A C
822 A G 823 A C 824 A U 839 A C 849 A U 850 A G
851 A G 852 A C 882 A C 904 A U 905 A G 906 A A
907 A A 908 A G 1423 A C 1424 A G 1470 A C 1479 A
15 1.26 2.45 152.1 -0.26 -0.11 12.9 79 6 3 2 9 4 1 0  G 654 A A 746 A C 747 A C 748 A C 826 A U 827 A G
829 A G 830 A U 831 A C 832 A U 833 A U 839 A C
848 A C 849 A U 850 A G 851 A U 870 A A 1101 A MG
1561 A
16 1.65 1.66 158.4 -0.86 -0.45 11.4 76 12 0 2 6 3 1 0  U 24 A C 25 A A 26 A A 50 A G 52 A G 117 A U 287
A A 288 A U 304 A A 338 A G 500 A C 501 A G 502 A
C 503 A C 504 A C 522 A A 523 A G 524 A G 537 A G
541 A G 542 A C 543 A G 544 A C 545 A U 551 A U
552 A A 553 A C 554 A C 555 A G 557 A G 1423 A C
1424 A G 1470 A G 1471 A MG 1551 A
17 1.39 1.70 156.5 -0.91 -0.77 8.8 81 7 3 2 1 1 1 0  G 664 A A 665 A G 667 A G 668 A U 669 A G 671 A A
716 A C 717 A U 723 A G 724 A C 732 A A 733 A G
734 A C 735 A C 736 A A 737 A C 738 A U 740 A C
806 A G 818 A A 819 A G 855 A C 856 A C 857 A C
866 A G 867 A C 868 A G 886 A G 887 A A 915 A G
916 A G 917 A A 918 A A 919 A G 1392 A U 1393 A A
1394 A C 1402 A C 1403 A C 1404 A C 1490 A G 1491
A A 1492 A C 1509 A U 1510 A G 1525 A G 1526 A C
1527 A U 1528 A G 1529 A
18 1.31 2.43 165.3 -0.21 -0.30 10.3 78 8 4 2 13 5 1 0  U 5 A G 6 A G 7 A G 297 A A 298 A G 299 A A 300 A
U 565 A G 567 A G 568 A C 569 A A 611 A C 612 A G
630 A G 654 A A 746 A C 747 A C 748 A G 821 A C
822 A G 823 A C 824 A G 825 A C 826 A U 839 A C
849 A U 850 A G 851 A G 852 A U 870 A U 871 A A
872 A A 873 A G 874 A G 876 A C 877 A G 878 A C
879 A
19 2.31 2.31 166.8 -0.69 -0.75 7.4 72 6 1 0 1 0 1 0  U 5 A G 238 A U 239 A C 240 A C 241 A C 242 A A
243 A U 244 A G 281 A G 292 A G 293 A U 294 A G
297 A G 299 A A 300 A G 301 A G 302 A A 303 A A
602 A U 603 A G 604 A U 605 A G 606 A A 608 A G
628 A G 629 A G 630 A G 631 A A 632 A A 759 A G
760 A G 761 A C 762 A G 763 A C 764 A G 765 A C
770 A G 771 A U 772 A G 773 A U 801 A A 802 A G
803 A U 804 A C 806 A A 807 A C 808 A G 809 A C
810 A C 811 A C 812 A C 882 A G 895 A C 896 A C
897 A G 903 A C 904 A U 905 A G 906 A MG 1567 A
20 2.70 2.70 169.4 -0.60 -0.76 6.1 72 5 1 0 1 0 1 0  U 5 A G 238 A U 239 A C 240 A C 241 A C 242 A A
243 A G 281 A G 292 A G 293 A U 294 A G 297 A G
299 A A 300 A G 301 A G 302 A A 303 A A 572 A A
573 A A 574 A G 575 A G 576 A G 577 A A 602 A U
603 A G 604 A U 605 A G 606 A A 608 A G 628 A G
629 A G 630 A G 631 A A 632 A A 759 A G 760 A A
814 A A 815 A G 881 A C 882 A G 886 A G 887 A G
890 A U 905 A G 906 A A 915 A G 916 A C 1402 A C
1403 A C 1404 A C 1490 A G 1491 A A 1492 A U 1510
A G 1511 A MG 1563 A
21 2.32 2.32 171.8 -0.74 -0.73 7.8 68 6 1 0 1 1 1 0  A 50 A G 52 A G 117 A C 242 A A 243 A U 244 A G
286 A U 287 A A 288 A A 338 A G 668 A U 669 A G
670 A G 671 A U 672 A G 673 A G 674 A A 675 A G
709 A G 710 A G 711 A A 712 A G 713 A G 714 A A
715 A G 730 A C 732 A A 733 A A 759 A G 760 A G
761 A C 762 A G 763 A C 764 A G 765 A A 766 A C
806 A A 807 A C 810 A C 811 A C 812 A C 882 A G
895 A C 896 A C 897 A G 903 A C 904 A U 905 A G
906 A A 907 A A 908 A G 1423 A C 1424 A G 1470 A
G 1471 A C 1479 A
22 1.26 1.80 174.1 -1.09 -0.72 11.4 75 11 4 1 2 2 1 0  A 50 A G 52 A G 117 A C 242 A A 243 A U 244 A G
286 A U 287 A A 288 A A 338 A G 664 A A 665 A G
667 A G 668 A U 669 A G 671 A G 730 A C 732 A A
733 A G 734 A C 735 A C 736 A A 737 A C 738 A U
740 A A 759 A G 760 A G 761 A C 762 A G 763 A C
764 A G 765 A A 766 A C 806 A A 807 A C 810 A C
811 A C 812 A C 882 A G 895 A C 896 A C 897 A G
903 A C 904 A U 905 A G 906 A A 907 A A 908 A G
1423 A C 1424 A G 1470 A C 1479 A
23 1.25 2.09 180.0 -1.01 -0.57 13.2 80 13 5 1 7 1 3 0  U 5 A G 299 A A 300 A U 565 A G 567 A G 568 A C
569 A A 602 A U 603 A G 604 A U 605 A G 606 A A
608 A G 628 A G 629 A G 630 A G 631 A A 632 A A
655 A C 656 A G 657 A G 658 A G 660 A G 661 A G
662 A A 663 A G 664 A C 736 A A 737 A U 743 A C
744 A C 745 A G 821 A C 822 A G 823 A C 824 A G
825 A G 852 A G 853 A U 871 A A 872 A A 873 A G
874 A G 876 A C 877 A G 878 A C 879 A
24 2.32 2.32 186.8 -0.75 -0.49 9.1 79 6 0 0 2 2 3 0  A 675 A A 676 A U 677 A U 678 A C 679 A G 693 A A
706 A C 707 A C 708 A G 709 A G 710 A G 711 A A
790 A C 796 A G 925 A G 926 A G 928 A G 929 A G
945 A A 946 A G 966 A A 1229 A C 1230 A G 1338 A
A 1339 A A 1340 A U 1341 A C 1342 A U 1381 A C
1382 A C 1383 A C 1384 A G 1385 A G 1386 A C 1400
A A 1503 A A 1507 A A 1531 A
25 1.16 2.13 219.4 -0.41 -0.33 12.3 80 12 7 3 15 4 4 0  A 50 A G 52 A G 117 A G 238 A U 239 A C 240 A U
287 A A 288 A C 290 A C 291 A G 292 A A 300 A G
301 A G 302 A U 304 A A 338 A C 554 A C 555 A C
564 A U 565 A G 566 A A 632 A A 859 A A 860 A G
861 A C 862 A G 876 A G 1077 A U 1078 A A 1101 A
G 1423 A C 1424 A G 1470 A G 1471 A
26 2.49 2.49 218.7 -0.74 -0.77 7.9 88 5 1 1 1 0 0 0  G 654 A A 655 A A 665 A A 722 A U 723 A G 724 A G
725 A G 727 A A 728 A A 729 A G 731 A U 743 A C
744 A C 745 A A 746 A C 747 A C 748 A A 790 A G
818 A C 822 A G 823 A C 824 A U 839 A C 849 A U
850 A G 851 A G 852 A G 853 A G 854 A G 855 A G
925 A G 926 A G 928 A G 929 A G 945 A A 946 A G
966 A A 1229 A C 1230 A G 1338 A A 1339 A A 1340
A U 1341 A C 1342 A U 1381 A C 1382 A C 1383 A C
1384 A G 1385 A G 1386 A C 1400 A A 1503 A A 1507
A C 1527 A U 1528 A A 1531 A
27 1.24 2.75 228.3 -0.49 -0.33 11.8 79 9 4 3 9 4 2 0  G 660 A G 661 A G 662 A G 664 A A 665 A G 667 A G
668 A U 669 A G 670 A G 671 A U 672 A G 673 A G
674 A A 675 A G 709 A G 710 A G 711 A A 712 A G
713 A G 714 A A 715 A A 733 A G 734 A C 735 A C
736 A A 737 A C 738 A U 740 A C 806 A U 831 A C
832 A U 833 A C 834 A U 835 A G 836 A G 837 A G
838 A C 840 A U 841 A C 848 A C 849 A A 1101 A
28 1.44 1.46 227.4 -0.73 -0.44 13.0 80 13 2 4 10 3 2 0  G 11 A U 12 A U 17 A C 18 A C 19 A U 20 A G 21 A
U 421 A G 506 A U 512 A U 534 A U 561 A G 567 A G
568 A C 569 A G 654 A A 746 A C 747 A C 748 A G
821 A C 822 A G 823 A C 824 A G 825 A C 826 A U
839 A C 849 A U 850 A G 851 A G 852 A U 863 A A
864 A U 870 A U 871 A A 872 A A 873 A G 874 A C
875 A G 876 A C 877 A G 878 A MG 1556 A
29 1.44 1.44 250.2 -1.10 -0.46 17.3 80 17 6 4 11 2 3 0  U 5 A G 11 A U 12 A U 17 A C 18 A C 19 A U 20 A G
21 A G 299 A A 300 A U 421 A G 506 A U 512 A U
534 A U 560 A U 561 A U 565 A G 566 A G 567 A G
568 A C 601 A A 602 A U 603 A G 604 A U 605 A G
606 A A 608 A G 628 A G 629 A G 630 A G 631 A A
632 A
30 2.32 2.32 257.6 -1.04 -0.71 12.7 81 8 6 1 3 1 1 0  U 5 A G 299 A A 300 A U 565 A G 566 A C 601 A A
602 A U 603 A G 604 A U 605 A G 606 A A 608 A G
628 A G 629 A G 630 A G 631 A A 632 A A 790 A G
858 A A 859 A A 860 A G 861 A C 862 A U 863 A C
866 A G 867 A G 876 A U 920 A U 921 A G 922 A A
923 A C 924 A G 925 A G 926 A G 929 A G 945 A A
946 A G 966 A C 1076 A G 1077 A U 1078 A G 1082 A
U 1083 A U 1086 A A 1229 A C 1230 A G 1338 A A
1339 A A 1340 A U 1341 A C 1342 A C 1383 A C 1384
A G 1385 A G 1386 A G 1387 A C 1388 A C 1389 A U
1390 A U 1391 A C 1400 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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