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PDBsum entry 3oge
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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 3oge calculated with MOLE 2.0 PDB id
3oge
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.42 1.61 47.2 -2.24 -0.63 22.2 76 6 4 2 0 2 1 0  G 662 A A 663 A G 664 A C 736 A A 737 A G 837 A
2 3.37 3.37 51.3 -0.70 -0.58 8.7 67 2 1 0 1 1 0 0  A 50 A G 52 A A 116 A G 117 A U 287 A A 288 A G
317 A A 338 A C 1409 A G 1410 A C 1411 A C 1412 A
A 1413 A G 1423 A C 1424 A C 1479 A G 1480 A U
1481 A G 1482 A A 1493 A
3 2.61 2.61 58.5 -0.94 -0.78 7.0 96 2 0 2 0 0 0 0  C 132 A U 133 A A 134 A C 135 A C 136 A C 137 A G
138 A G 139 A A 140 A A 141 A G 142 A A 185 A C
186 A C 187 A G 189 A i:G G 189 A i:H G 189 A i:I
C 218 A C 219 A U 222 A C 224 A C 225 A G 226 A G
257 A G 258 A
4 1.41 2.11 63.3 -0.89 -0.05 19.2 80 5 2 0 5 2 2 0  A 675 A A 676 A U 677 A C 707 A C 708 A G 709 A
5 3.14 3.14 69.3 -0.67 -0.78 6.4 75 1 1 1 0 0 1 0  G 662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 670 A G 671 A U 672 A G 673 A G 674 A A
675 A A 676 A G 709 A G 710 A G 711 A A 712 A G
713 A G 714 A A 715 A A 733 A G 734 A C 736 A A
737 A C 738 A U 740 A C 806 A G 837 A G 838 A
6 2.02 2.01 71.3 -0.50 -0.74 5.5 82 4 0 0 1 0 0 0  G 52 A A 116 A G 117 A U 118 A A 119 A U 252 A G
258 A G 259 A C 268 A C 269 A G 317 A G 318 A G
319 A C 320 A A 321 A C 1424 A U 1425 A C 1426 A
U 1436 A C 1437 A G 1438 A C 1439 A G 1464 A C
1465 A C 1466 A G 1467 A A 1468 A
7 1.37 2.20 72.4 -0.78 0.02 6.9 79 4 0 1 3 5 2 0  A 675 A A 676 A U 677 A G 693 A A 694 A C 707 A C
708 A G 709 A
8 1.37 2.23 78.8 -0.97 -0.01 13.1 80 5 1 1 7 5 1 0  G 693 A A 694 A
9 1.67 2.64 92.7 -1.03 -0.04 13.2 78 8 1 1 4 4 3 0  A 675 A A 676 A U 677 A G 693 A C 707 A C 708 A G
709 A
10 1.42 2.11 97.7 -0.99 -0.44 15.3 84 6 2 3 6 1 2 0  G 662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 671 A A 716 A C 717 A C 732 A A 733 A G
734 A C 736 A A 737 A C 738 A U 740 A C 805 A C
806 A G 837 A G 838 A G 1525 A
11 1.80 1.81 98.1 -0.80 -0.77 8.2 83 5 1 2 0 0 0 0  U 24 A C 25 A A 26 A A 50 A G 52 A A 116 A G 117
A U 287 A A 288 A G 317 A A 338 A G 500 A C 501 A
G 502 A C 503 A C 504 A C 522 A A 523 A G 524 A G
537 A G 540 A G 541 A G 542 A U 551 A U 552 A A
553 A C 554 A C 555 A G 557 A G 1423 A C 1424 A
MG 1551 A
12 1.67 2.63 99.1 -1.20 -0.05 19.3 80 9 2 1 8 4 2 0  G 693 A
13 1.46 2.32 108.5 -0.84 -0.36 6.5 81 5 0 4 4 5 2 0  G 662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 671 A G 693 A A 694 A A 716 A C 717 A C
732 A A 733 A G 734 A C 736 A A 737 A C 738 A U
740 A C 805 A C 806 A G 837 A G 838 A G 1525 A
14 2.29 2.29 111.1 -0.45 -0.79 4.1 72 1 0 0 0 0 0 0  G 52 A A 116 A G 117 A U 118 A A 119 A A 120 A G
122 A C 123 A G 124 A U 125 A G 127 A G 128 A G
129 A i:A U 129 A C 131 A C 132 A U 133 A A 134 A
C 135 A C 136 A C 137 A G 138 A G 139 A A 140 A A
141 A G 142 A C 218 A C 219 A U 222 A C 224 A C
225 A G 226 A G 227 A A 228 A U 229 A G 230 A G
231 A G 232 A C 233 A C 234 A U 252 A C 267 A C
268 A C 312 A A 313 A C 314 A G 317 A G 318 A G
319 A G 606 A C 1424 A U 1425 A C 1426 A
15 2.10 2.97 133.8 -0.88 -0.49 12.6 79 6 1 0 5 2 1 0  G 693 A C 796 A G 886 A G 887 A G 888 A G 890 A A
915 A G 916 A C 1403 A C 1404 A G 1405 A C 1409 A
C 1490 A G 1491 A A 1492 A A 1493 A G 1494 A U
1506 A A 1507 A G 1508 A C 1509 A U 1510 A G 1511
A U 1512 A G 1520 A G 1521 A U 1522 A G 1523 A
16 2.31 2.31 139.6 -0.82 -0.72 9.0 70 6 1 1 1 1 0 0  A 50 A G 52 A A 116 A G 117 A C 242 A A 243 A U
244 A G 286 A U 287 A A 288 A G 317 A G 662 A A
663 A G 664 A A 665 A G 667 A G 668 A U 669 A G
671 A G 730 A C 732 A A 733 A G 734 A C 736 A A
737 A C 738 A U 740 A G 760 A G 761 A C 762 A G
763 A C 764 A G 765 A A 766 A C 806 A A 807 A G
809 A C 810 A C 811 A C 812 A G 837 A G 838 A C
882 A G 895 A C 896 A C 897 A G 903 A C 904 A U
905 A G 906 A A 907 A A 908 A G 1423 A C 1424 A C
1479 A
17 2.63 2.63 146.2 -0.47 -0.80 4.0 91 1 0 2 0 0 0 0  G 570 A G 662 A A 663 A G 664 A A 665 A G 667 A G
668 A U 669 A G 671 A A 716 A C 717 A U 723 A C
732 A A 733 A G 734 A C 736 A A 737 A C 738 A U
740 A C 805 A C 806 A G 818 A A 819 A G 837 A G
838 A G 855 A C 856 A C 866 A G 867 A C 868 A G
886 A G 887 A A 915 A G 916 A G 917 A A 918 A A
919 A U 1393 A A 1394 A C 1403 A C 1404 A C 1409
A C 1490 A G 1491 A A 1492 A A 1493 A G 1494 A C
1509 A U 1510 A G 1525 A G 1526 A C 1527 A U 1528
A G 1529 A G 1530 A A 1531 A
18 1.53 2.28 162.6 -0.83 -0.50 7.8 73 5 1 1 3 5 0 0  A 50 A G 52 A A 116 A G 117 A C 242 A G 286 A U
287 A A 288 A G 317 A A 338 A A 573 A A 574 A G
693 A A 694 A C 796 A U 884 A G 887 A G 888 A A
889 A G 890 A A 907 A A 908 A G 1405 A G 1423 A C
1424 A C 1479 A U 1506 A A 1507 A G 1508 A C 1509
A U 1510 A G 1511 A U 1512 A G 1520 A G 1521 A U
1522 A G 1523 A MG 1582 A
19 1.89 1.85 174.2 -0.87 -0.73 10.4 78 9 2 2 1 0 0 0  C 23 A U 24 A C 25 A A 26 A A 243 A U 244 A G 500
A C 501 A G 502 A C 503 A C 504 A C 522 A A 523 A
G 524 A G 537 A G 540 A G 541 A G 542 A U 551 A U
552 A A 553 A C 554 A C 555 A G 557 A G 558 A A
559 A G 662 A A 663 A G 664 A A 665 A G 667 A G
668 A U 669 A G 671 A G 730 A C 732 A A 733 A G
734 A C 736 A A 737 A C 738 A U 740 A G 760 A G
761 A C 762 A G 763 A C 764 A G 765 A A 766 A C
806 A A 807 A G 809 A C 810 A C 811 A C 812 A G
837 A G 838 A C 882 A C 883 A U 884 A G 885 A G
895 A C 896 A C 897 A G 903 A C 904 A U 905 A G
906 A A 907 A A 908 A MG 1551 A
20 1.48 1.51 207.5 -0.79 -0.76 8.2 88 5 2 5 0 0 0 0  G 662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 671 A A 716 A C 717 A U 723 A C 732 A A
733 A G 734 A C 736 A A 737 A C 738 A U 740 A C
805 A C 806 A G 818 A A 819 A G 837 A G 838 A G
855 A C 856 A C 857 A C 866 A G 867 A C 868 A A
919 A U 920 A G 929 A C 930 A G 1082 A U 1085 A U
1086 A G 1087 A G 1088 A G 1089 A U 1090 A G 1094
A C 1096 A C 1097 A C 1098 A G 1104 A A 1105 A C
1388 A C 1389 A U 1390 A U 1391 A G 1392 A G 1525
A G 1526 A C 1527 A U 1528 A G 1529 A A 1531 A
21 1.82 1.82 203.6 -0.80 -0.70 8.8 74 8 3 1 0 3 0 0  U 5 A G 6 A A 26 A G 27 A G 28 A G 127 A G 128 A
G 129 A i:A U 129 A C 131 A C 132 A U 133 A A 134
A C 135 A C 136 A C 137 A G 138 A G 139 A A 140 A
A 141 A G 142 A C 218 A C 219 A U 222 A C 224 A C
225 A G 226 A G 227 A A 228 A U 229 A G 230 A G
297 A A 298 A G 299 A A 300 A G 500 A C 501 A G
502 A C 503 A C 504 A C 508 A A 509 A C 522 A A
523 A G 524 A G 537 A G 540 A G 541 A G 542 A G
544 A C 545 A G 550 A U 551 A A 602 A U 603 A G
604 A U 605 A G 606 A A 611 A C 612 A G 628 A G
629 A G 630 A G 631 A A 632 A MG 1551 A
22 1.81 1.91 202.1 -0.81 -0.72 9.0 76 12 1 1 1 1 0 0  A 119 A A 120 A C 121 A U 239 A C 240 A C 241 A C
242 A A 243 A U 244 A U 252 A U 253 A G 258 A G
259 A C 268 A C 269 A C 277 A G 281 A A 282 A C
283 A G 284 A G 319 A C 320 A A 321 A G 662 A A
663 A G 664 A A 665 A G 667 A G 668 A U 669 A G
671 A G 730 A C 732 A A 733 A G 734 A C 736 A A
737 A C 738 A U 740 A G 760 A G 761 A C 762 A G
763 A C 764 A G 765 A A 766 A C 806 A A 807 A G
809 A C 810 A C 811 A C 812 A G 837 A C 882 A G
895 A C 896 A C 897 A G 903 A C 904 A U 905 A G
906 A C 1426 A U 1436 A C 1437 A G 1438 A C 1439
A G 1464 A C 1465 A C 1466 A G 1467 A A 1468 A
23 1.47 2.07 218.3 -0.85 -0.73 9.3 80 6 3 3 1 1 0 0  A 50 A G 52 A A 116 A G 117 A C 242 A G 286 A U
287 A A 288 A G 317 A A 338 A A 572 A A 573 A A
574 A C 866 A G 867 A U 884 A G 887 A G 888 A A
889 A G 890 A A 907 A A 908 A G 916 A G 917 A A
918 A A 919 A U 920 A G 929 A C 930 A G 1082 A U
1085 A U 1086 A G 1087 A G 1088 A G 1089 A U 1090
A G 1094 A C 1096 A C 1097 A C 1098 A G 1104 A A
1105 A C 1388 A C 1389 A U 1390 A U 1391 A G 1392
A U 1393 A A 1394 A G 1423 A C 1424 A C 1479 A C
1509 A U 1510 A G 1529 A G 1530 A MG 1582 A
24 1.42 1.73 219.4 -0.88 -0.64 10.9 86 7 3 5 5 1 2 0  A 665 A C 719 A G 721 A A 722 A U 723 A A 733 A G
818 A A 819 A G 855 A C 856 A C 857 A C 866 A G
867 A C 868 A A 919 A U 920 A G 929 A C 930 A G
1082 A U 1085 A U 1086 A G 1087 A G 1088 A G 1089
A U 1090 A G 1094 A C 1096 A C 1097 A C 1098 A G
1104 A A 1105 A C 1388 A C 1389 A U 1390 A U 1391
A G 1392 A C 1527 A U 1528 A G 1529 A A 1531 A
25 2.11 2.11 231.2 -0.60 -0.62 8.4 76 7 4 1 5 2 2 0  G 127 A G 128 A G 129 A i:A U 129 A C 131 A C 132
A U 133 A A 134 A C 135 A C 136 A C 137 A G 138 A
G 139 A A 140 A A 141 A G 142 A C 218 A C 219 A U
222 A C 224 A C 225 A G 226 A G 227 A A 228 A U
229 A G 230 A A 300 A U 565 A G 566 A G 567 A G
568 A C 569 A A 602 A U 603 A G 604 A U 605 A G
606 A G 628 A G 629 A G 630 A G 631 A A 632 A A
655 A C 656 A G 657 A G 658 A G 660 A G 661 A G
662 A A 663 A G 664 A U 743 A C 744 A C 745 A A
746 A G 821 A C 822 A G 823 A C 824 A G 825 A G
837 A G 852 A G 853 A U 871 A A 872 A A 873 A G
874 A C 875 A G 876 A C 877 A G 878 A C 879 A
26 1.26 1.65 273.9 -0.32 -0.27 9.6 78 7 3 6 15 4 2 0  G 662 A A 663 A G 664 A A 665 A G 667 A G 668 A U
669 A G 671 A A 716 A C 717 A C 732 A A 733 A G
734 A C 736 A A 737 A C 738 A U 740 A C 805 A C
806 A G 837 A G 838 A G 928 A G 929 A G 1175 A C
1378 A G 1379 A U 1380 A U 1381 A A 1503 A A 1507
A G 1525 A G 1526 A C 1527 A A 1531 A
27 1.52 2.11 269.4 -0.64 -0.58 10.2 82 8 5 2 10 2 3 0  G 127 A G 128 A G 129 A i:A U 129 A C 131 A C 132
A U 133 A A 134 A C 135 A C 136 A C 137 A G 138 A
G 139 A A 140 A A 141 A G 142 A C 218 A C 219 A U
222 A C 224 A C 225 A G 226 A G 227 A A 228 A U
229 A G 230 A A 300 A U 565 A G 566 A G 567 A G
568 A C 569 A A 602 A U 603 A G 604 A U 605 A G
606 A G 628 A G 629 A G 630 A G 631 A A 632 A A
665 A C 719 A G 721 A A 722 A U 723 A G 724 A G
725 A G 727 A A 729 A G 731 A A 733 A G 818 A G
821 A C 822 A G 823 A C 824 A G 854 A G 855 A U
871 A A 872 A A 873 A G 874 A C 875 A G 876 A C
877 A G 878 A C 879 A C 1527 A
28 2.28 2.28 273.5 -0.65 -0.74 6.7 71 6 2 0 1 1 2 0  U 5 A G 127 A G 128 A G 129 A i:A U 129 A C 131 A
C 132 A U 133 A A 134 A C 135 A C 136 A C 137 A G
138 A G 139 A A 140 A A 141 A G 142 A C 218 A C
219 A U 222 A C 224 A C 225 A G 226 A G 227 A A
228 A U 229 A G 230 A G 238 A U 239 A C 240 A C
241 A C 242 A A 243 A U 244 A G 281 A G 292 A G
293 A U 294 A G 297 A G 299 A A 300 A G 301 A G
302 A A 303 A A 602 A U 603 A G 604 A U 605 A G
606 A G 628 A G 629 A G 630 A G 631 A A 632 A G
668 A U 669 A G 670 A G 671 A U 672 A G 673 A G
674 A A 675 A A 676 A G 709 A G 710 A G 711 A A
712 A G 713 A G 714 A A 715 A G 730 A C 732 A A
733 A G 760 A G 761 A C 762 A G 763 A C 764 A G
765 A A 766 A C 806 A A 807 A G 809 A C 810 A C
811 A C 812 A C 882 A G 895 A C 896 A C 897 A G
903 A C 904 A U 905 A G 906 A
29 1.54 1.86 296.2 -0.95 -0.68 12.0 80 10 8 4 4 2 1 0  G 127 A G 128 A G 129 A i:A U 129 A C 131 A C 132
A U 133 A A 134 A C 135 A C 136 A C 137 A G 138 A
G 139 A A 140 A A 141 A G 142 A C 218 A C 219 A U
222 A C 224 A C 225 A G 226 A G 227 A A 228 A U
229 A G 230 A A 300 A U 565 A G 566 A G 567 A A
602 A U 603 A G 604 A U 605 A G 606 A G 628 A G
629 A G 630 A G 631 A A 632 A G 858 A A 859 A A
860 A G 861 A C 862 A U 863 A C 866 A G 867 A G
876 A U 920 A G 928 A G 929 A C 930 A C 1076 A G
1077 A U 1078 A G 1082 A U 1085 A U 1086 A G 1087
A G 1088 A G 1089 A U 1090 A G 1094 A C 1096 A C
1097 A C 1098 A G 1104 A A 1105 A C 1388 A C 1389
A U 1390 A U 1391 A
30 1.37 2.20 375.5 -0.42 -0.44 9.6 77 10 8 4 18 5 2 0  G 127 A G 128 A G 129 A i:A U 129 A C 131 A C 132
A U 133 A A 134 A C 135 A C 136 A C 137 A G 138 A
G 139 A A 140 A A 141 A G 142 A C 218 A C 219 A U
222 A C 224 A C 225 A G 226 A G 227 A A 228 A U
229 A G 230 A A 300 A U 565 A G 566 A G 567 A A
602 A U 603 A G 604 A U 605 A G 606 A G 628 A G
629 A G 630 A G 631 A A 632 A G 858 A A 859 A A
860 A G 861 A C 862 A U 863 A C 866 A G 867 A G
876 A U 920 A G 929 A C 930 A C 931 A C 1076 A G
1077 A U 1078 A G 1082 A U 1086 A G 1087 A G 1088
A U 1090 A U 1091 A C 1172 A G 1173 A G 1174 A G
1175 A G 1178 A G 1181 A G 1182 A G 1387 A C 1388
A C 1389 A U 1390 A U 1391 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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