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PDBsum entry 3oge
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Tunnel analysis for: 3oge calculated with  MOLE 2.0
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PDB id
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3oge
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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12 tunnels,
coloured by tunnel radius |
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15 tunnels,
coloured by
tunnel radius
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15 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.11 |
1.11 |
69.0 |
-0.84 |
-0.56 |
9.7 |
77 |
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6 |
0 |
0 |
2 |
2 |
0 |
0 |
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U 950 A G 951 A G 971 A C 972 A G 973 A A 974 A A
975 A G 976 A A 977 A A 978 A C 980 A U 1358 A C
1359 A A 1360 A G 1361 A C 1362 A A 1363 A i:A G
1365 A C 1366 A
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2 |
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1.33 |
1.33 |
79.6 |
-0.95 |
-0.62 |
10.3 |
86 |
5 |
0 |
2 |
3 |
1 |
1 |
0 |
A 949 A U 950 A G 951 A G 971 A C 972 A G 973 A A
974 A A 975 A A 977 A G 1224 A U 1307 A G 1311 A
G 1312 A C 1320 A G 1323 A A 1324 A C 1325 A U
1358 A A 1363 A i:A C 1363 A G 1365 A C 1366 A
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3 |
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1.25 |
1.25 |
91.4 |
-0.82 |
-0.66 |
9.2 |
79 |
7 |
0 |
1 |
1 |
1 |
0 |
0 |
A 949 A U 950 A G 951 A G 971 A C 972 A G 973 A A
974 A A 975 A A 977 A G 1224 A G 1255 A A 1256 A
U 1257 A G 1258 A C 1259 A C 1260 A A 1324 A C
1325 A G 1355 A G 1356 A U 1358 A C 1359 A G 1361
A C 1362 A A 1363 A i:A C 1363 A U 1364 A G 1365
A C 1366 A
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4 |
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1.39 |
1.51 |
101.3 |
-0.70 |
-0.70 |
7.3 |
79 |
4 |
0 |
1 |
1 |
1 |
0 |
0 |
A 949 A U 950 A G 951 A G 971 A C 972 A G 973 A A
974 A A 975 A A 977 A G 1224 A U 1257 A G 1258 A
C 1259 A C 1260 A C 1270 A G 1271 A G 1272 A G
1273 A G 1274 A A 1275 A C 1277 A C 1314 A U 1315
A A 1324 A C 1325 A G 1355 A G 1356 A U 1358 A G
1361 A C 1362 A A 1363 A i:A C 1363 A U 1364 A G
1365 A C 1366 A
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5 |
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1.31 |
1.31 |
138.7 |
-1.04 |
-0.63 |
11.8 |
77 |
11 |
2 |
1 |
2 |
2 |
0 |
0 |
A 949 A U 950 A G 951 A G 971 A C 972 A G 973 A A
974 A A 975 A A 977 A G 1224 A C 1234 A U 1235 A
A 1236 A G 1241 A C 1242 A C 1243 A A 1289 A G
1290 A G 1291 A U 1292 A G 1293 A G 1294 A A 1324
A C 1325 A U 1351 A C 1352 A G 1353 A C 1354 A G
1355 A G 1356 A U 1358 A A 1363 A i:A C 1363 A U
1364 A G 1365 A C 1366 A
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6 |
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1.60 |
1.82 |
16.4 |
-0.10 |
0.04 |
14.2 |
85 |
1 |
1 |
0 |
3 |
1 |
0 |
0 |
G 683 A A 684 A
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7 |
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1.59 |
1.80 |
16.8 |
0.28 |
0.18 |
4.2 |
79 |
1 |
0 |
0 |
2 |
1 |
0 |
0 |
G 685 A U 686 A
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8 |
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1.44 |
2.03 |
18.7 |
0.49 |
0.31 |
11.6 |
86 |
1 |
2 |
0 |
5 |
1 |
1 |
0 |
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9 |
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1.42 |
1.98 |
20.6 |
0.86 |
0.40 |
3.3 |
86 |
1 |
0 |
0 |
4 |
1 |
0 |
0 |
G 685 A U 686 A
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10 |
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1.33 |
2.54 |
23.9 |
2.13 |
0.52 |
3.8 |
79 |
0 |
1 |
1 |
9 |
1 |
0 |
0 |
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11 |
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1.34 |
1.34 |
24.2 |
2.15 |
0.54 |
3.8 |
79 |
0 |
1 |
1 |
9 |
1 |
0 |
0 |
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12 |
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1.28 |
2.25 |
25.1 |
2.80 |
0.68 |
1.7 |
79 |
0 |
1 |
0 |
12 |
1 |
0 |
0 |
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13 |
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1.29 |
2.27 |
25.3 |
2.90 |
0.72 |
1.2 |
79 |
0 |
1 |
0 |
12 |
1 |
0 |
0 |
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14 |
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1.11 |
2.44 |
18.2 |
1.25 |
0.36 |
6.4 |
71 |
1 |
1 |
0 |
5 |
0 |
1 |
0 |
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15 |
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1.11 |
2.44 |
23.6 |
1.67 |
0.21 |
1.6 |
70 |
0 |
0 |
0 |
7 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program