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PDBsum entry 3o2z
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Top Page protein dna_rna ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 3o2z calculated with MOLE 2.0 PDB id
3o2z
Tunnels calculated on whole structure Tunnels calculated excluding ligands
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28 tunnels, coloured by tunnel radius 19 tunnels, coloured by tunnel radius 19 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.45 45.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 G 1109 1 G 1110 1 G
1111 1 G 1112 1 G 1114 1 A 1139 1 G 1140 1 G 1141
1 C 1641 1 G 1642 1 U 1643 1 A 1750 1 C 1751 1 A
1763 1 C 1772 1 A 1781 1 A 1782 1 OHX 1909 1 UNK
17 e UNK 19 e UNK 20 e
2 1.57 1.57 47.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 A 1026 1 A 1088 1 U
1089 1 G 1109 1 G 1110 1 G 1111 1 A 1139 1 G 1140
1 G 1141 1 A 1142 1 A 1143 1 G 1629 1 U 1630 1 A
1631 1 A 1763 1 U 1771 1 C 1772 1 G 1792 1 G 1793
1 OHX 1909 1
3 1.61 1.61 50.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 A 1026 1 U 1089 1 G
1109 1 G 1110 1 G 1111 1 A 1139 1 G 1140 1 G 1141
1 A 1142 1 A 1143 1 U 1144 1 U 1628 1 G 1629 1 U
1630 1 A 1631 1 A 1763 1 U 1771 1 C 1772 1 G 1792
1 G 1793 1 OHX 1909 1
4 1.55 1.55 54.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 G 1109 1 G 1110 1 G
1111 1 A 1139 1 G 1140 1 G 1141 1 C 1641 1 G 1642
1 A 1763 1 U 1770 1 U 1771 1 C 1772 1 C 1773 1 C
1783 1 C 1784 1 U 1785 1 G 1786 1 C 1787 1 G 1788
1 G 1789 1 OHX 1909 1 UNK 20 e UNK 21 e
5 1.47 1.47 58.5 -0.50 -0.79 3.3 71 0 0 1 0 0 1 0  U 9 1 U 15 1 G 16 1 G 577 1 A 619 1 A 620 1 G
1109 1 G 1110 1 G 1111 1 U 1136 1 A 1137 1 A 1138
1 A 1139 1 G 1140 1 G 1141 1 C 1634 1 C 1641 1 A
1753 1 A 1755 1 A 1763 1 C 1772 1 OHX 1838 1 OHX
1851 1 OHX 1909 1
6 1.46 1.46 58.9 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 G 1109 1 G 1110 1 G
1111 1 A 1139 1 G 1140 1 G 1141 1 C 1641 1 G 1642
1 U 1643 1 C 1644 1 G 1645 1 A 1749 1 A 1750 1 C
1751 1 U 1752 1 A 1754 1 A 1755 1 A 1763 1 C 1772
1 OHX 1851 1 OHX 1909 1
7 1.45 1.45 60.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 A 621 1 G 1109 1 G
1110 1 G 1111 1 G 1114 1 U 1115 1 A 1116 1 U 1117
1 G 1118 1 U 1120 1 G 1122 1 G 1126 1 G 1127 1 A
1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773 1 G 1774
1 UNK 4 e UNK 8 e UNK 12 e UNK 15 e UNK 19 e
8 1.49 1.49 61.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 619 1 A 620 1 A 621 1 A 622 1 A
623 1 G 624 1 C 625 1 A 973 1 A 974 1 C 1022 1 A
1023 1 U 1024 1 A 1025 1 A 1026 1 G 1109 1 G 1110
1 G 1111 1 G 1114 1 C 1121 1 G 1127 1 C 1128 1 U
1129 1 A 1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773
1 G 1774 1 OHX 1862 1 OHX 1906 1
9 1.54 1.54 62.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 9 1 U 15 1 G 16 1 A 619 1 A 620 1 G 1109 1 G
1110 1 G 1111 1 A 1139 1 G 1140 1 G 1141 1 C 1639
1 C 1640 1 C 1641 1 A 1755 1 A 1756 1 G 1757 1 A
1763 1 C 1772 1 OHX 1851 1 OHX 1909 1
10 1.53 1.53 64.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 15 1 G 16 1 A 312 1 U 313 1 A 315 1 U 350 1 A
619 1 A 620 1 A 621 1 A 622 1 G 624 1 A 970 1 A
971 1 G 972 1 A 1025 1 A 1026 1 U 1106 1 G 1109 1
G 1110 1 G 1111 1 G 1114 1 U 1129 1 G 1130 1 A
1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773 1 G 1774
1 OHX 1906 1
11 1.53 1.53 82.6 0.78 -0.16 3.7 78 4 0 1 12 2 1 0  U 15 1 G 16 1 A 601 1 A 619 1 A 620 1 G 1108 1 G
1109 1 G 1110 1 G 1111 1 G 1112 1 A 1132 1 A 1133
1 C 1134 1 U 1135 1 A 1139 1 OHX 1869 1
12 1.54 1.54 82.9 -0.51 -0.74 5.8 63 1 0 0 1 0 0 0  U 15 1 G 16 1 C 18 1 A 19 1 G 20 1 U 21 1 A 22 1
G 23 1 U 24 1 A 26 1 A 28 1 U 29 1 G 30 1 C 31 1
U 33 1 G 467 1 A 468 1 C 469 1 A 470 1 C 596 1 G
597 1 U 598 1 U 600 1 A 601 1 U 602 1 A 619 1 A
620 1 G 1108 1 G 1109 1 G 1110 1 G 1111 1 G 1112
1 A 1132 1 U 1135 1 A 1139 1 OHX 1852 1 OHX 1869
1 OHX 1877 1
13 1.44 1.44 93.0 -0.50 -0.78 4.8 82 3 0 0 0 0 0 0  U 15 1 G 16 1 G 307 1 C 308 1 C 309 1 C 310 1 U
311 1 A 312 1 U 349 1 U 350 1 C 351 1 A 352 1 A
353 1 A 619 1 A 620 1 A 621 1 A 622 1 G 624 1 G
631 1 A 970 1 A 1025 1 A 1026 1 U 1106 1 G 1107 1
G 1109 1 G 1110 1 G 1111 1 G 1114 1 U 1129 1 G
1130 1 A 1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773
1 G 1774 1 OHX 1906 1
14 1.42 1.42 93.0 -0.55 -0.69 6.6 61 2 0 0 1 1 1 0  U 15 1 G 16 1 C 18 1 A 19 1 G 20 1 U 546 1 U 547
1 G 548 1 G 549 1 A 570 1 G 571 1 A 585 1 G 586 1
G 597 1 U 598 1 A 599 1 U 600 1 A 601 1 U 602 1 A
619 1 A 620 1 G 1108 1 G 1109 1 G 1110 1 G 1111 1
G 1112 1 A 1132 1 U 1135 1 A 1139 1 OHX 1869 1
15 1.42 1.42 99.4 -0.44 -0.78 4.3 91 1 0 0 1 0 0 0  U 15 1 G 16 1 C 310 1 U 311 1 U 313 1 A 619 1 A
620 1 A 621 1 G 1107 1 G 1108 1 G 1109 1 G 1110 1
G 1111 1 A 1113 1 G 1114 1 U 1117 1 G 1118 1 A
1131 1 A 1132 1 A 1139 1 G 1140 1 G 1141 1 G 1658
1 A 1659 1 A 1660 1 U 1661 1 U 1735 1 G 1736 1 G
1737 1 U 1738 1 C 1739 1 A 1740 1 U 1741 1 U 1742
1 U 1743 1 C 1772 1 C 1773 1 OHX 1826 1 OHX 1911 1
16 1.42 1.42 105.5 -0.64 -0.63 5.6 69 3 0 1 1 2 0 0  U 15 1 G 16 1 C 351 1 U 611 1 A 619 1 A 620 1 A
621 1 A 622 1 G 624 1 G 631 1 U 632 1 U 633 1 G
634 1 A 746 1 A 806 1 A 807 1 U 808 1 A 1025 1 A
1026 1 G 1100 1 G 1102 1 U 1103 1 U 1104 1 C 1105
1 U 1106 1 G 1107 1 G 1108 1 G 1109 1 G 1110 1 G
1111 1 G 1114 1 U 1129 1 G 1130 1 A 1139 1 G 1140
1 G 1141 1 C 1772 1 C 1773 1 G 1774 1 OHX 1906 1
17 1.48 1.48 120.5 -0.43 -0.71 4.8 84 0 2 1 3 0 1 0  U 15 1 G 16 1 C 308 1 C 309 1 C 310 1 U 311 1 A
312 1 A 352 1 G 364 1 A 369 1 G 372 1 G 373 1 U
374 1 U 375 1 A 619 1 A 620 1 A 621 1 A 622 1 G
624 1 U 750 1 G 751 1 A 760 1 A 791 1 U 792 1 U
794 1 A 970 1 A 1025 1 A 1026 1 U 1106 1 G 1107 1
G 1109 1 G 1110 1 G 1111 1 G 1114 1 U 1129 1 G
1130 1 A 1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773
1 G 1774 1 OHX 1875 1 OHX 1898 1 OHX 1906 1
18 1.59 1.59 128.1 -0.35 -0.72 3.2 92 0 0 1 2 0 1 0  U 15 1 G 16 1 G 307 1 C 308 1 C 309 1 C 310 1 U
311 1 A 312 1 A 352 1 G 372 1 G 373 1 U 374 1 A
619 1 A 620 1 A 621 1 A 622 1 G 624 1 U 749 1 U
750 1 G 751 1 A 752 1 A 753 1 A 754 1 U 790 1 A
791 1 U 792 1 A 793 1 U 794 1 U 795 1 A 970 1 A
1025 1 A 1026 1 U 1106 1 G 1107 1 G 1109 1 G 1110
1 G 1111 1 G 1114 1 U 1129 1 G 1130 1 A 1139 1 G
1140 1 G 1141 1 C 1772 1 C 1773 1 G 1774 1 OHX
1875 1 OHX 1898 1 OHX 1906 1
19 1.49 1.49 143.1 -0.47 -0.72 4.4 80 1 0 1 2 0 1 0  U 1 1 U 15 1 G 16 1 C 308 1 C 309 1 C 310 1 U 311
1 A 312 1 A 352 1 G 364 1 A 366 1 A 367 1 U 368 1
A 369 1 G 373 1 U 374 1 U 375 1 A 619 1 A 620 1 A
621 1 A 622 1 G 624 1 U 759 1 A 760 1 G 761 1 A
762 1 G 763 1 U 764 1 G 765 1 A 769 1 A 770 1 U
794 1 A 970 1 A 1025 1 A 1026 1 U 1106 1 G 1107 1
G 1109 1 G 1110 1 G 1111 1 G 1114 1 U 1129 1 G
1130 1 A 1139 1 G 1140 1 G 1141 1 C 1772 1 C 1773
1 G 1774 1 OHX 1837 1 OHX 1875 1 OHX 1898 1 OHX
1906 1

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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