 |
PDBsum entry 3nix
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 3nix calculated with  MOLE 2.0
|
PDB id
|
|
|
|
3nix
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
17 pores,
coloured by radius |
|
20 pores,
coloured by radius
|
20 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.37 |
1.62 |
29.5 |
-0.99 |
-0.21 |
15.7 |
80 |
|
3 |
2 |
2 |
2 |
2 |
0 |
0 |
|
|
 |
|
2 |
 |
1.81 |
1.88 |
31.6 |
-1.86 |
-0.38 |
19.4 |
80 |
5 |
3 |
3 |
1 |
3 |
0 |
0 |
|
|
3 |
 |
2.58 |
2.81 |
35.4 |
-1.53 |
-0.73 |
10.5 |
88 |
1 |
3 |
5 |
2 |
0 |
2 |
0 |
|
|
4 |
 |
1.72 |
1.72 |
52.2 |
-2.13 |
-0.66 |
20.6 |
83 |
4 |
4 |
7 |
1 |
2 |
2 |
0 |
|
|
5 |
 |
1.72 |
1.73 |
53.1 |
-2.01 |
-0.63 |
23.8 |
81 |
5 |
5 |
4 |
1 |
2 |
1 |
0 |
|
|
6 |
 |
1.95 |
3.19 |
58.1 |
-1.96 |
-0.46 |
27.1 |
80 |
6 |
6 |
3 |
2 |
1 |
1 |
0 |
|
|
7 |
 |
1.72 |
1.73 |
61.7 |
-2.26 |
-0.49 |
22.8 |
76 |
5 |
7 |
3 |
1 |
3 |
1 |
0 |
|
|
8 |
 |
1.73 |
1.72 |
62.2 |
-2.35 |
-0.53 |
21.6 |
80 |
4 |
7 |
7 |
1 |
3 |
2 |
0 |
|
|
9 |
 |
1.50 |
1.50 |
65.4 |
-2.05 |
-0.68 |
15.6 |
81 |
3 |
4 |
8 |
1 |
2 |
4 |
0 |
|
|
10 |
 |
1.52 |
1.52 |
65.7 |
-1.91 |
-0.68 |
17.0 |
78 |
4 |
5 |
5 |
1 |
2 |
3 |
0 |
|
|
11 |
 |
1.18 |
1.18 |
75.8 |
-1.17 |
-0.29 |
16.9 |
79 |
7 |
6 |
4 |
4 |
5 |
0 |
0 |
MSE 341 A MSE 342 A FAD 501 A
|
|
12 |
|
1.44 |
1.53 |
84.0 |
-2.13 |
-0.59 |
21.7 |
82 |
6 |
11 |
5 |
4 |
3 |
2 |
0 |
|
|
13 |
|
1.39 |
1.44 |
135.6 |
-1.08 |
-0.30 |
15.7 |
84 |
10 |
11 |
6 |
6 |
5 |
0 |
0 |
MSE 341 H MSE 342 H FAD 508 H
|
|
14 |
|
1.53 |
2.79 |
162.5 |
-1.93 |
-0.45 |
24.1 |
78 |
14 |
15 |
10 |
6 |
8 |
2 |
0 |
|
|
15 |
|
1.29 |
1.26 |
180.9 |
-1.62 |
-0.48 |
22.3 |
84 |
14 |
14 |
13 |
9 |
5 |
1 |
0 |
MSE 341 C MSE 342 C FAD 503 C MSE 171 F
|
|
16 |
|
1.36 |
1.39 |
282.9 |
-1.75 |
-0.45 |
24.4 |
80 |
24 |
27 |
14 |
12 |
11 |
3 |
0 |
MSE 171 C MSE 341 C MSE 342 C FAD 503 C MSE 171 F
|
|
17 |
|
1.31 |
1.60 |
313.0 |
-1.75 |
-0.29 |
23.1 |
76 |
18 |
22 |
10 |
12 |
13 |
4 |
0 |
MSE 53 G MSE 376 G
|
|
18 |
|
1.20 |
2.63 |
342.1 |
-1.51 |
-0.29 |
21.0 |
81 |
20 |
17 |
14 |
15 |
12 |
3 |
0 |
MSE 171 C MSE 341 C MSE 342 C FAD 503 C MSE 171 F
MSE 53 G MSE 376 G
|
|
19 |
|
1.33 |
1.81 |
48.7 |
0.00 |
0.03 |
8.8 |
81 |
4 |
2 |
5 |
5 |
4 |
1 |
0 |
MSE 341 G MSE 342 G FAD 507 G
|
 |
20 |
|
1.16 |
1.15 |
25.5 |
0.49 |
0.32 |
10.9 |
71 |
3 |
1 |
0 |
2 |
4 |
1 |
0 |
MSE 249 F MSE 252 F
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program