PDBsum entry 3nix Go to PDB code:  Tunnel analysis for: 3nix calculated with MOLE 2.0 PDB id 3nix Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 3.07 21.9 0.67 0.34 9.4 71 2 0 0 5 3 1 0   2 1.27 1.39 24.3 1.10 0.43 7.4 77 2 0 0 4 3 2 0  MSE 249 C MSE 252 C 3 1.42 1.64 15.9 -0.73 -0.15 13.2 73 1 0 0 3 2 2 0   4 1.22 1.36 16.4 0.76 0.23 10.9 78 2 3 0 2 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.