PDBsum entry 3nip Go to PDB code:  Tunnel analysis for: 3nip calculated with MOLE 2.0 PDB id 3nip Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   7 tunnels, coloured by tunnel radius 8 tunnels, coloured by tunnel radius 8 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.14 1.64 85.5 -1.25 -0.43 17.9 76 7 7 3 8 2 7 0   2 1.26 1.48 93.4 -0.51 -0.30 13.5 79 7 6 3 12 2 6 0  16D 327 E 3 1.25 1.13 94.9 -0.24 -0.23 11.9 79 7 5 3 13 2 6 0  16D 327 D 4 1.20 1.07 94.8 -1.00 -0.25 14.6 77 10 5 4 4 5 5 0   5 1.26 1.17 102.7 -0.31 -0.14 11.8 81 8 4 4 12 4 6 0  16D 327 D 6 1.41 2.61 30.5 -0.83 -0.52 14.5 73 2 3 0 5 1 2 0   7 1.41 2.61 30.6 -0.82 -0.51 14.1 73 2 3 0 5 1 2 0   8 1.46 1.46 30.0 -0.85 -0.54 14.2 73 2 3 0 5 1 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.