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PDBsum entry 3mp5
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Tunnel analysis for: 3mp5 calculated with  MOLE 2.0
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PDB id
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3mp5
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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7 tunnels,
coloured by
tunnel radius
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7 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.50 |
1.70 |
37.0 |
-1.96 |
-0.60 |
21.8 |
81 |
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5 |
2 |
3 |
4 |
0 |
0 |
0 |
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2 |
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1.49 |
1.49 |
37.8 |
-0.75 |
-0.47 |
15.3 |
83 |
4 |
2 |
3 |
6 |
0 |
0 |
0 |
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3 |
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1.26 |
1.31 |
37.2 |
0.52 |
0.16 |
2.3 |
84 |
1 |
0 |
6 |
7 |
5 |
1 |
1 |
HMG 401 B
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4 |
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1.18 |
1.39 |
23.4 |
-1.85 |
-0.34 |
22.3 |
78 |
3 |
2 |
1 |
3 |
2 |
1 |
0 |
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5 |
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1.55 |
1.55 |
17.1 |
0.26 |
-0.10 |
8.1 |
87 |
1 |
0 |
0 |
4 |
0 |
1 |
0 |
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6 |
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1.49 |
1.50 |
16.5 |
0.23 |
0.05 |
7.7 |
84 |
1 |
0 |
0 |
3 |
0 |
1 |
0 |
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7 |
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1.50 |
1.50 |
16.4 |
0.30 |
0.07 |
9.0 |
87 |
1 |
0 |
0 |
4 |
0 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program