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PDBsum entry 3knm
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Tunnel analysis for: 3knm calculated with  MOLE 2.0
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PDB id
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3knm
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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2 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.18 |
1.18 |
78.6 |
-0.60 |
-0.79 |
4.9 |
91 |
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1 |
0 |
1 |
0 |
0 |
0 |
0 |
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U 566 A U 576 A G 577 A G 808 A A 1254 A U 1255 A
A 2060 A G 2061 A A 2062 A C 2063 A C 2064 A C
2065 A C 2066 A G 2069 A G 2070 A G 2246 A G 2252
A G 2253 A C 2254 A G 2255 A G 2436 A U 2437 A U
2438 A C 2441 A C 2442 A C 2443 A G 2444 A G 2445
A G 2446 A G 2447 A G 2502 A G 2595 A G 2597 A MG
2954 A MG 2955 A MG 2983 A
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2 |
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1.17 |
1.17 |
88.3 |
-0.69 |
-0.73 |
7.5 |
78 |
3 |
0 |
1 |
1 |
0 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A A 945 A G 946 A G 947 A C 964 A A
1254 A U 1255 A A 2060 A U 2249 A G 2250 A G 2251
A G 2252 A G 2253 A C 2254 A G 2255 A G 2444 A G
2447 A A 2448 A U 2449 A C 2498 A U 2500 A G 2502
A MG 2977 A MG 3199 A MG 3227 A
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3 |
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1.17 |
1.17 |
99.2 |
-0.54 |
-0.79 |
4.5 |
91 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A A 821 A U 822 A G 836 A C 837 A U
922 A C 923 A C 935 A A 945 A G 946 A G 947 A C
964 A C 965 A G 966 A C 967 A G 968 A U 969 A A
1254 A U 1255 A A 2060 A G 2270 A U 2357 A G 2444
A G 2447 A A 2448 A U 2449 A C 2498 A U 2500 A G
2502 A MG 2977 A MG 3142 A MG 3173 A MG 3199 A
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4 |
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1.17 |
1.17 |
100.1 |
-0.58 |
-0.79 |
5.2 |
89 |
2 |
0 |
1 |
0 |
0 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A G 823 A A 824 A C 825 A A 829 A A
945 A G 946 A G 947 A C 964 A C 965 A A 1254 A U
1255 A A 2060 A C 2248 A U 2249 A U 2257 A C 2258
A G 2259 A A 2274 A C 2275 A G 2280 A C 2281 A G
2444 A G 2447 A A 2448 A U 2449 A C 2498 A U 2500
A G 2502 A MG 2977 A MG 3143 A MG 3199 A
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5 |
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1.18 |
1.18 |
104.6 |
-0.57 |
-0.79 |
4.9 |
91 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A A 945 A G 947 A G 948 A C 949 A C
961 A U 963 A G 979 A C 982 A A 983 A A 984 A C
985 A G 1002 A G 1003 A G 1025 A U 1026 A C 1145
A C 1146 A C 1147 A A 1254 A U 1255 A G 2029 A A
2030 A A 2031 A A 2060 A G 2444 A G 2447 A A 2448
A C 2498 A U 2500 A G 2502 A MG 3199 A C 84 B G
85 B G 86 B G 87 B
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6 |
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1.25 |
1.25 |
125.6 |
-0.53 |
-0.77 |
4.3 |
81 |
1 |
0 |
1 |
0 |
1 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A A 945 A G 947 A G 948 A C 949 A A
959 A C 961 A U 963 A A 983 A A 984 A U 1026 A A
1254 A U 1255 A U 2028 A G 2029 A A 2030 A A 2031
A A 2060 A G 2444 A G 2447 A A 2448 A U 2457 A G
2458 A A 2459 A U 2460 A C 2461 A C 2463 A G 2482
A G 2485 A G 2486 A G 2487 A A 2488 A C 2498 A U
2500 A G 2502 A MG 2977 A MG 2998 A MG 3119 A MG
3199 A C 88 B G 89 B
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7 |
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1.23 |
1.23 |
132.1 |
-0.75 |
-0.77 |
6.8 |
86 |
2 |
1 |
2 |
0 |
0 |
1 |
0 |
C 40 A C 41 A G 42 A C 184 A U 193 A G 194 A C
203 A A 204 A U 206 A C 237 A C 238 A C 253 A G
254 A C 433 A U 566 A A 567 A U 568 A U 576 A G
577 A A 590 A A 609 A G 610 A C 611 A C 612 A G
613 A U 614 A U 667 A G 668 A G 669 A A 670 A C
671 A C 672 A C 673 A G 674 A U 803 A A 804 A G
805 A C 806 A U 807 A G 808 A G 809 A U 810 A A
1254 A U 1255 A A 2060 A G 2444 A G 2446 A G 2502
A MG 2938 A MG 3131 A
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8 |
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1.24 |
1.24 |
142.0 |
-0.63 |
-0.73 |
6.7 |
86 |
3 |
2 |
2 |
1 |
0 |
0 |
0 |
U 566 A A 567 A U 568 A U 569 A A 575 A U 576 A G
577 A G 808 A A 945 A G 947 A G 948 A C 949 A C
961 A U 963 A A 983 A A 984 A G 1022 A U 1023 A U
1026 A A 1127 A A 1128 A U 1133 A A 1254 A U 1255
A G 2027 A U 2028 A G 2029 A A 2030 A A 2031 A A
2060 A G 2444 A G 2447 A A 2448 A U 2457 A G 2489
A C 2498 A U 2500 A G 2502 A A 2541 A A 2738 A U
2739 A A 2740 A C 2760 A MG 3199 A
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9 |
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1.18 |
1.18 |
168.5 |
-0.53 |
-0.79 |
4.5 |
91 |
1 |
0 |
1 |
0 |
0 |
0 |
0 |
U 566 A U 576 A G 577 A G 741 A G 742 A G 808 A A
1254 A U 1255 A U 1673 A C 1675 A A 1690 A C 1691
A A 1698 A C 1765 A U 1766 A C 1767 A U 1768 A G
1769 A A 1977 A A 1978 A C 1979 A G 1980 A A 1981
A C 1982 A C 1983 A A 2060 A G 2061 A A 2062 A C
2063 A C 2064 A C 2065 A C 2066 A G 2252 A U 2438
A A 2439 A C 2441 A C 2442 A C 2443 A G 2444 A G
2445 A G 2446 A G 2447 A A 2451 A G 2502 A U 2506
A G 2581 A G 2582 A U 2584 A U 2585 A C 2586 A C
2601 A A 2602 A G 2608 A U 2609 A C 2610 A MG
2908 A MG 2954 A MG 2955 A MG 2983 A MG 3120 A MG
3225 A
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10 |
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1.16 |
1.16 |
191.9 |
-0.93 |
-0.65 |
10.6 |
86 |
9 |
3 |
4 |
4 |
1 |
0 |
0 |
U 566 A A 567 A U 568 A U 576 A G 577 A C 671 A C
672 A C 673 A G 674 A A 675 A A 676 A A 677 A C
678 A C 679 A G 680 A G 681 A G 682 A U 773 A A
774 A G 775 A G 776 A G 794 A C 795 A C 796 A C
797 A G 798 A A 800 A A 802 A U 803 A A 804 A C
806 A U 807 A G 808 A G 809 A U 810 A A 1254 A U
1255 A G 1355 A G 1356 A A 1367 A G 1369 A C 1370
A G 1371 A A 1566 A A 1812 A G 1813 A G 1814 A A
1815 A G 1816 A G 1822 A A 2060 A G 2444 A G 2446
A G 2502 A MG 2910 A MG 2918 A MG 2938 A MG 3088
A MG 3131 A
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11 |
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1.36 |
1.36 |
26.2 |
1.37 |
0.56 |
7.9 |
78 |
1 |
2 |
0 |
9 |
1 |
1 |
0 |
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12 |
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1.34 |
1.96 |
15.3 |
0.09 |
0.13 |
10.6 |
90 |
2 |
1 |
2 |
4 |
0 |
1 |
0 |
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13 |
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1.30 |
2.32 |
15.8 |
2.78 |
0.69 |
3.1 |
76 |
0 |
1 |
0 |
7 |
1 |
0 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program