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PDBsum entry 3kjs
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Pore analysis for: 3kjs calculated with  MOLE 2.0
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PDB id
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3kjs
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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25 pores,
coloured by radius |
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22 pores,
coloured by radius
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22 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.73 |
2.19 |
30.5 |
0.73 |
0.21 |
7.6 |
84 |
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3 |
0 |
0 |
6 |
1 |
1 |
0 |
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DQ1 602 C NAP 702 C
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2 |
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1.16 |
2.10 |
36.3 |
-0.63 |
-0.19 |
10.0 |
82 |
5 |
1 |
1 |
9 |
1 |
4 |
0 |
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3 |
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1.38 |
3.43 |
39.2 |
-2.17 |
-0.37 |
24.0 |
84 |
5 |
3 |
2 |
4 |
2 |
0 |
0 |
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4 |
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1.23 |
1.44 |
60.0 |
-2.32 |
-0.53 |
26.0 |
79 |
10 |
4 |
4 |
2 |
3 |
0 |
0 |
EDO 901 A
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5 |
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1.44 |
1.52 |
69.5 |
-2.82 |
-0.67 |
31.6 |
87 |
14 |
7 |
8 |
3 |
0 |
1 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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6 |
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1.44 |
1.95 |
77.4 |
-2.31 |
-0.53 |
29.7 |
84 |
11 |
8 |
7 |
7 |
2 |
0 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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7 |
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1.42 |
1.51 |
82.3 |
-2.69 |
-0.56 |
30.8 |
84 |
14 |
10 |
8 |
5 |
1 |
1 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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8 |
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1.92 |
2.01 |
82.5 |
-1.92 |
-0.49 |
24.3 |
80 |
10 |
8 |
1 |
2 |
1 |
2 |
0 |
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9 |
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1.69 |
1.77 |
83.2 |
-2.14 |
-0.57 |
25.2 |
83 |
10 |
7 |
7 |
6 |
2 |
1 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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10 |
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1.74 |
1.74 |
82.7 |
-2.16 |
-0.52 |
26.8 |
83 |
10 |
8 |
7 |
7 |
2 |
1 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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11 |
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1.30 |
1.70 |
89.1 |
-1.74 |
-0.48 |
25.2 |
80 |
10 |
7 |
1 |
3 |
1 |
2 |
0 |
EDO 905 B
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12 |
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1.44 |
1.52 |
95.1 |
-2.29 |
-0.48 |
26.6 |
83 |
14 |
11 |
8 |
8 |
2 |
2 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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13 |
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1.36 |
1.70 |
96.8 |
-1.63 |
-0.50 |
20.9 |
82 |
8 |
9 |
5 |
10 |
3 |
2 |
0 |
SO4 701 B
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14 |
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1.37 |
1.41 |
97.8 |
-2.55 |
-0.55 |
28.2 |
85 |
16 |
9 |
7 |
6 |
1 |
2 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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15 |
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1.33 |
1.55 |
106.1 |
-2.30 |
-0.55 |
25.5 |
81 |
14 |
10 |
6 |
7 |
3 |
2 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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16 |
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1.63 |
1.96 |
108.0 |
-2.48 |
-0.47 |
30.6 |
81 |
12 |
12 |
8 |
9 |
4 |
1 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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17 |
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1.69 |
1.70 |
115.9 |
-2.06 |
-0.45 |
25.3 |
80 |
12 |
11 |
8 |
11 |
4 |
2 |
0 |
SO4 701 A SO4 701 B SO4 701 C SO4 701 D
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18 |
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1.97 |
2.05 |
149.6 |
-2.23 |
-0.57 |
28.1 |
83 |
20 |
12 |
8 |
5 |
2 |
2 |
0 |
SO4 701 A SO4 701 B EDO 905 B SO4 701 C SO4 701 D
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19 |
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1.54 |
1.83 |
155.4 |
-1.62 |
-0.50 |
22.2 |
83 |
16 |
13 |
5 |
8 |
2 |
3 |
0 |
EDO 905 B SO4 701 D
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20 |
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1.35 |
1.51 |
177.4 |
-1.05 |
-0.15 |
19.1 |
78 |
14 |
9 |
2 |
10 |
8 |
5 |
0 |
EDO 905 B DQ1 602 C
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21 |
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1.69 |
1.78 |
177.3 |
-2.35 |
-0.52 |
26.6 |
82 |
13 |
13 |
12 |
7 |
4 |
3 |
0 |
SO4 701 A DQ1 602 B SO4 701 B SO4 701 C SO4 701 D
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22 |
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1.59 |
2.16 |
186.6 |
-2.30 |
-0.54 |
25.8 |
83 |
17 |
11 |
13 |
5 |
5 |
2 |
0 |
SO4 701 A DQ1 602 B SO4 701 B SO4 701 C SO4 701 D
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program