PDBsum entry 3k3c

Tunnel analysis for: 3k3c calculated with

MOLE 2.0

PDB id

3k3c

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

25 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.79

1.86

19.8

0.14

-0.04

14.4

92

2

1

1

5

1

0

0

2

1.81

1.91

25.2

-0.77

-0.15

24.4

88

4

4

1

4

1

0

0

GOL 160 B

3

1.20

1.24

32.2

-1.67

-0.37

25.2

86

3

4

5

4

2

0

0

GOL 161 A GOL 160 B SO4 157 D

4

1.75

3.43

35.1

-2.52

-0.71

33.7

85

5

6

3

2

1

0

0

GOL 163 A GOL 160 B GOL 161 B

5

1.75

3.36

36.7

-2.46

-0.67

32.0

85

5

6

4

2

1

0

0

GOL 163 A GOL 160 B GOL 161 B

6

1.75

3.39

40.8

-2.73

-0.74

34.3

86

4

6

4

1

1

0

0

GOL 163 A GOL 160 B GOL 161 B

7

1.77

1.82

44.9

-2.70

-0.57

41.1

85

7

10

0

6

0

0

0

GOL 163 A GOL 160 B GOL 161 B

8

1.74

1.95

47.9

-2.96

-0.67

42.0

88

6

11

1

4

0

0

0

GOL 163 A GOL 160 B GOL 161 B

9

1.37

1.37

17.8

-1.55

-0.27

16.2

81

3

1

2

1

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.