PDBsum entry 3imf

Pore analysis for: 3imf calculated with

MOLE 2.0

PDB id

3imf

Pores calculated on whole structure

Pores calculated excluding ligands

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visualization
with HETATM:

without HETATM:

8 pores, coloured by radius

11 pores, coloured by radius

11 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

3.15

3.44

29.0

-1.08

-0.23

15.7

78

1

2

1

3

1

2

0

MSE 202 B

2

2.38

3.45

35.9

-1.14

-0.14

6.5

84

1

0

4

2

3

2

0

3

2.77

4.10

58.0

-1.29

-0.43

17.7

81

4

4

1

3

1

1

0

MSE 202 D

4

1.79

1.95

60.1

-1.39

-0.61

19.2

87

5

4

1

3

0

0

0

MSE 59 D

5

1.64

1.64

61.3

-2.05

0.04

19.1

74

10

4

7

0

8

0

0

ACT 255 B

6

1.82

1.91

64.7

-0.89

-0.51

8.8

88

6

2

5

5

2

2

0

MSE 59 D

7

1.78

1.81

66.5

-0.97

-0.43

7.6

87

4

1

8

5

3

2

0

MSE 15 C MSE 59 C

8

1.11

1.13

68.3

-0.77

0.05

11.5

77

5

3

4

5

6

0

0

MSE 241 A MSE 241 B MSE 243 B ACT 255 B

9

1.66

1.81

86.5

-1.78

-0.10

18.0

78

10

4

7

2

8

2

0

ACT 255 B

10

1.12

1.12

86.6

0.18

0.13

5.3

75

2

3

0

10

6

0

0

MSE 241 A MSE 241 B MSE 243 B ACT 255 B MSE 241 C
MSE 243 C MSE 241 D ACT 255 D

11

1.10

1.18

99.2

-0.92

-0.06

14.0

77

6

6

4

8

6

2

0

MSE 202 B MSE 241 C MSE 243 C MSE 241 D ACT 255 D

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.