PDBsum entry 3imf Go to PDB code:  Tunnel analysis for: 3imf calculated with MOLE 2.0 PDB id 3imf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.57 1.57 42.6 -1.76 0.10 18.6 69 4 2 4 1 5 0 0  ACT 255 B 2 1.57 1.57 45.2 -1.86 0.06 19.9 70 5 2 4 1 5 0 0  ACT 255 D 3 1.57 1.58 46.7 -1.83 -0.03 20.4 69 4 2 4 1 5 0 0  ACT 255 D 4 1.56 1.57 49.2 -1.71 0.06 22.1 71 5 2 2 1 4 1 0  ACT 255 D 5 1.55 1.57 50.8 -1.62 -0.03 21.8 73 5 2 2 2 4 1 0  ACT 255 D 6 1.54 1.56 54.2 -1.63 -0.07 19.4 73 4 2 4 2 5 1 0  ACT 255 D 7 1.16 1.16 54.4 0.13 0.16 7.0 71 1 2 0 6 4 0 0  MSE 241 A MSE 241 B MSE 243 B ACT 255 B 8 1.19 1.19 56.8 0.08 0.18 8.2 68 1 3 0 6 5 0 0  MSE 241 A MSE 243 A MSE 241 B ACT 255 B 9 1.00 1.57 16.9 -0.12 -0.05 7.2 71 1 0 2 1 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.