PDBsum entry 3ef8 Go to PDB code:  Pore analysis for: 3ef8 calculated with MOLE 2.0 PDB id 3ef8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   2 pores, coloured by radius 10 pores, coloured by radius 10 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.30 2.02 25.8 0.32 0.34 6.3 78 3 0 1 4 4 0 0   2 1.45 1.87 26.8 -0.17 0.26 8.7 77 3 0 3 3 5 0 0  MSE 16 B 3 1.26 2.05 27.0 -0.47 0.21 10.9 78 3 0 3 2 5 0 0  MSE 16 A 4 1.46 1.88 28.8 -0.08 0.06 10.5 81 2 0 2 4 4 0 0  MSE 1 A 5 1.55 2.98 30.1 -0.72 0.22 9.8 77 4 0 3 3 6 0 0  MSE 1 A MSE 16 B 6 1.34 1.34 37.2 -1.26 -0.24 18.9 83 3 2 3 3 3 1 0  MSE 1 A 7 1.34 1.36 37.9 0.15 0.14 11.0 82 2 1 2 6 3 1 0  MSE 1 A 8 1.33 1.33 39.1 -0.44 0.27 10.5 79 4 1 3 5 5 1 0  MSE 1 A MSE 16 B 9 1.34 1.36 78.4 -0.88 0.00 12.7 78 5 3 4 6 6 1 0  MSE 15 A MSE 16 A PEG 152 A PGE 154 A 10 1.58 3.79 93.0 -0.81 -0.03 13.7 79 6 4 4 6 7 0 0  MSE 15 A MSE 16 A PEG 152 A PGE 154 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.