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PDBsum entry 3ef8
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Tunnel analysis for: 3ef8 calculated with  MOLE 2.0
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PDB id
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3ef8
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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6 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.00 |
2.67 |
25.3 |
0.25 |
0.34 |
6.5 |
72 |
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2 |
0 |
1 |
4 |
5 |
0 |
0 |
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2 |
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0.98 |
2.73 |
26.2 |
0.15 |
0.42 |
3.6 |
71 |
1 |
0 |
0 |
6 |
5 |
0 |
0 |
PG4 152 B
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3 |
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0.98 |
2.71 |
28.5 |
-0.42 |
0.30 |
8.4 |
73 |
2 |
0 |
1 |
4 |
6 |
0 |
0 |
MSE 1 A
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4 |
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1.01 |
2.75 |
31.4 |
-0.13 |
0.19 |
7.8 |
71 |
3 |
1 |
0 |
4 |
5 |
0 |
0 |
MSE 1 A
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5 |
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0.99 |
2.80 |
37.6 |
-0.15 |
0.38 |
9.6 |
75 |
2 |
1 |
1 |
6 |
5 |
1 |
0 |
MSE 1 A
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6 |
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0.91 |
3.12 |
39.1 |
-1.07 |
0.08 |
11.9 |
76 |
3 |
2 |
3 |
4 |
4 |
0 |
0 |
MSE 15 B MSE 16 B
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program