PDBsum entry 3ebf Go to PDB code:  Tunnel analysis for: 3ebf calculated with MOLE 2.0 PDB id 3ebf Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   10 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.84 1.88 15.0 -1.63 -0.65 12.6 83 1 1 2 2 0 0 0   2 1.49 2.13 18.1 -1.76 0.18 4.7 71 1 1 2 2 2 3 0   3 1.37 1.75 18.6 -1.39 -0.05 3.1 71 0 1 2 2 2 3 0   4 1.48 2.07 20.6 -1.41 0.13 2.2 68 0 0 2 1 2 2 0   5 1.49 2.11 21.7 -1.64 0.06 6.2 71 1 1 2 2 2 3 0   6 1.87 2.11 21.8 -1.14 0.01 2.9 74 0 1 3 1 3 1 0   7 1.34 2.13 16.0 -1.07 -0.42 11.5 88 1 2 1 2 0 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.