PDBsum entry 3dpm Go to PDB code:  Tunnel analysis for: 3dpm calculated with MOLE 2.0 PDB id 3dpm Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 2.84 29.2 -0.30 -0.15 7.6 84 1 3 4 2 3 1 0   2 1.24 2.28 48.4 -1.12 -0.25 8.7 85 2 3 7 2 4 0 0   3 1.17 3.06 20.9 1.23 0.56 6.1 72 1 0 1 3 4 1 0  LAS 800 B 4 1.20 3.04 28.2 -0.19 -0.13 7.1 84 1 2 4 2 3 1 0   5 1.12 3.87 34.2 -1.24 -0.20 9.0 84 2 1 7 1 4 0 0   6 1.07 1.44 15.8 -0.15 0.52 13.2 74 1 1 1 3 3 0 0   7 1.11 1.40 16.8 2.63 0.67 1.0 76 0 0 1 7 0 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.