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PDBsum entry 3dkt
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Pore analysis for: 3dkt calculated with  MOLE 2.0
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PDB id
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3dkt
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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24 pores,
coloured by radius |
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24 pores,
coloured by radius
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24 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.40 |
1.63 |
25.2 |
0.91 |
0.18 |
8.6 |
81 |
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2 |
2 |
1 |
5 |
1 |
0 |
0 |
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2 |
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1.25 |
1.57 |
29.8 |
0.37 |
0.09 |
11.2 |
76 |
3 |
2 |
0 |
5 |
1 |
1 |
0 |
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3 |
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1.73 |
1.74 |
40.8 |
-1.98 |
0.10 |
26.8 |
70 |
6 |
0 |
0 |
0 |
5 |
0 |
0 |
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4 |
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1.27 |
5.20 |
49.4 |
-1.73 |
-0.29 |
24.3 |
74 |
7 |
4 |
1 |
3 |
4 |
1 |
1 |
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5 |
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1.36 |
1.57 |
59.0 |
-0.86 |
0.07 |
23.6 |
79 |
8 |
2 |
0 |
5 |
1 |
1 |
0 |
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6 |
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1.39 |
1.50 |
60.4 |
-0.96 |
0.15 |
24.6 |
81 |
8 |
1 |
0 |
5 |
1 |
1 |
0 |
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7 |
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1.37 |
1.48 |
60.4 |
-0.63 |
0.05 |
20.0 |
80 |
8 |
3 |
0 |
5 |
1 |
1 |
0 |
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8 |
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1.37 |
1.64 |
65.2 |
-1.09 |
0.06 |
26.1 |
81 |
9 |
2 |
1 |
5 |
1 |
1 |
0 |
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9 |
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1.44 |
1.71 |
66.0 |
-0.99 |
-0.01 |
24.5 |
81 |
9 |
3 |
1 |
5 |
1 |
1 |
0 |
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10 |
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1.36 |
1.63 |
30.1 |
0.57 |
0.05 |
8.7 |
79 |
3 |
2 |
1 |
5 |
1 |
1 |
0 |
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11 |
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1.25 |
2.46 |
30.7 |
-0.98 |
-0.33 |
20.5 |
82 |
4 |
4 |
1 |
3 |
1 |
0 |
0 |
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12 |
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1.36 |
1.46 |
32.5 |
0.39 |
0.13 |
9.1 |
77 |
3 |
3 |
0 |
5 |
1 |
1 |
0 |
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13 |
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1.35 |
1.44 |
34.6 |
-0.04 |
0.04 |
12.0 |
78 |
3 |
3 |
0 |
5 |
1 |
1 |
0 |
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14 |
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1.27 |
1.70 |
37.2 |
0.27 |
0.05 |
11.8 |
79 |
4 |
3 |
1 |
5 |
1 |
1 |
0 |
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15 |
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1.33 |
1.36 |
37.8 |
0.09 |
0.03 |
11.1 |
77 |
2 |
4 |
0 |
5 |
1 |
1 |
0 |
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16 |
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1.25 |
1.55 |
59.4 |
-0.41 |
0.11 |
19.8 |
79 |
8 |
1 |
0 |
5 |
1 |
1 |
0 |
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17 |
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1.28 |
1.56 |
71.1 |
-2.22 |
-0.44 |
22.4 |
75 |
7 |
9 |
4 |
3 |
5 |
3 |
0 |
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18 |
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1.28 |
2.44 |
26.3 |
-1.58 |
-0.45 |
19.6 |
79 |
2 |
3 |
2 |
2 |
2 |
1 |
0 |
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19 |
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1.26 |
1.61 |
33.4 |
0.39 |
-0.03 |
9.4 |
77 |
3 |
3 |
1 |
5 |
1 |
2 |
0 |
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20 |
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1.31 |
1.39 |
39.2 |
-0.16 |
-0.08 |
13.6 |
75 |
3 |
5 |
0 |
5 |
1 |
1 |
0 |
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21 |
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1.31 |
1.61 |
32.3 |
0.33 |
0.00 |
9.5 |
77 |
3 |
3 |
1 |
5 |
1 |
2 |
0 |
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22 |
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1.35 |
1.46 |
36.8 |
-0.04 |
0.02 |
11.9 |
77 |
2 |
5 |
0 |
5 |
1 |
1 |
0 |
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23 |
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1.36 |
1.94 |
53.8 |
-2.36 |
-0.52 |
27.1 |
77 |
6 |
5 |
2 |
1 |
1 |
2 |
0 |
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24 |
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1.35 |
2.25 |
38.1 |
-1.66 |
-0.11 |
23.1 |
68 |
5 |
4 |
0 |
1 |
4 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program