PDBsum entry 3d5o Go to PDB code:  Pore analysis for: 3d5o calculated with MOLE 2.0 PDB id 3d5o Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 pores, coloured by radius 11 pores, coloured by radius 11 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.46 1.53 43.0 -1.03 -0.25 14.4 76 6 2 3 5 4 2 0   2 1.74 1.74 43.6 -1.45 -0.31 15.5 83 3 2 4 4 2 2 0  SO4 206 D 3 3.93 6.24 43.6 -2.58 -0.34 36.8 83 10 2 1 3 0 1 0   4 1.43 1.42 45.6 -1.94 -0.27 28.5 79 8 1 1 4 2 0 0   5 1.64 1.64 55.0 -1.61 -0.06 24.6 76 10 1 1 4 2 2 0   6 1.42 1.42 55.5 -1.56 -0.32 23.2 82 9 4 3 5 3 1 0  SO4 206 D 7 1.90 2.87 57.4 -1.25 -0.44 8.8 86 2 2 10 3 1 1 0   8 1.64 1.64 57.5 -1.45 -0.21 21.1 79 8 4 3 4 3 3 0  SO4 206 D 9 1.13 1.29 105.2 -1.50 -0.42 17.6 83 8 5 8 8 3 3 0  NAG 208 D 10 1.18 1.32 108.2 -1.38 -0.34 16.3 81 7 5 8 7 3 5 0  NAG 208 D 11 1.30 1.56 155.8 -1.52 -0.33 20.7 82 17 5 8 9 5 3 0  SO4 207 A SO4 205 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.