PDBsum entry 3d5o

Tunnel analysis for: 3d5o calculated with

MOLE 2.0

PDB id

3d5o

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

5 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.69

3.10

17.7

-0.49

-0.08

12.8

80

1

1

1

5

2

0

0

2

1.69

3.12

22.6

-0.24

0.12

11.0

78

1

1

1

6

3

1

0

3

1.70

1.87

25.0

-0.99

-0.20

15.0

75

2

1

1

4

4

1

0

4

1.39

2.44

15.2

-0.95

-0.03

13.2

69

1

1

1

2

2

1

1

5

1.23

1.83

15.7

0.44

0.15

7.5

74

1

1

1

2

1

1

2

6

1.30

1.62

15.1

1.10

0.70

4.2

62

1

0

1

3

3

1

1

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.