PDBsum entry 3d5k Go to PDB code:  Pore analysis for: 3d5k calculated with MOLE 2.0 PDB id 3d5k Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   19 pores, coloured by radius 19 pores, coloured by radius 19 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.21 1.49 32.0 -0.95 -0.49 11.6 81 2 2 2 4 1 2 0   2 1.41 1.41 38.9 -1.38 -0.55 14.7 82 3 1 2 2 2 1 0   3 1.26 1.38 51.9 -1.92 -0.74 7.8 88 2 1 10 4 1 1 0   4 1.26 1.37 54.2 -1.60 -0.52 20.3 87 5 2 3 5 2 1 0   5 1.26 1.37 57.1 -1.73 -0.54 21.7 85 5 3 3 6 2 1 0   6 1.28 1.40 58.5 -1.40 -0.49 16.4 86 5 2 4 5 2 2 0   7 1.41 1.41 58.6 -1.69 -0.69 8.5 88 3 1 10 4 1 1 0   8 1.28 1.39 58.6 -1.63 -0.47 18.9 84 5 2 3 5 2 2 0   9 1.41 1.41 60.3 -1.54 -0.54 20.1 86 6 2 3 6 2 1 0   10 1.30 1.32 61.8 -1.39 -0.47 16.7 84 6 2 3 5 2 2 0   11 2.09 2.15 63.8 -1.83 -0.77 9.5 92 3 1 10 4 1 0 0   12 1.30 1.32 66.7 -1.79 -0.74 7.9 89 3 1 10 4 1 1 0   13 1.22 1.49 68.8 -1.47 -0.64 9.8 91 2 2 10 7 0 1 0   14 1.20 1.49 69.7 -1.11 -0.39 20.5 87 5 3 2 8 2 1 0   15 1.22 1.49 71.4 -1.34 -0.43 21.9 85 5 3 2 9 2 1 0   16 1.21 1.48 72.9 -1.30 -0.41 19.5 85 5 4 2 8 1 2 0   17 1.21 1.49 74.0 -0.96 -0.38 16.6 85 5 3 3 8 2 2 0   18 1.21 1.20 144.0 -2.04 -0.46 13.3 85 10 8 26 5 11 1 0  NA 475 A 19 1.23 1.21 149.3 -2.08 -0.52 12.4 87 9 6 34 6 10 0 0  NA 475 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.