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PDBsum entry 3d5k
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Tunnel analysis for: 3d5k calculated with  MOLE 2.0
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PDB id
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3d5k
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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7 tunnels,
coloured by tunnel radius |
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6 tunnels,
coloured by
tunnel radius
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6 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
1.48 |
124.0 |
-2.27 |
-0.55 |
15.0 |
85 |
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9 |
8 |
26 |
7 |
8 |
1 |
0 |
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NA 475 A
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2 |
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1.25 |
1.39 |
125.0 |
-2.28 |
-0.55 |
14.4 |
85 |
10 |
8 |
26 |
4 |
9 |
1 |
0 |
NA 475 A
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3 |
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1.24 |
1.36 |
125.3 |
-2.33 |
-0.56 |
15.4 |
86 |
9 |
7 |
27 |
5 |
9 |
1 |
0 |
NA 475 A
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4 |
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1.25 |
1.40 |
127.8 |
-2.29 |
-0.55 |
15.2 |
85 |
10 |
9 |
27 |
4 |
9 |
1 |
0 |
NA 475 A
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5 |
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1.22 |
1.36 |
139.8 |
-2.27 |
-0.62 |
12.0 |
88 |
9 |
7 |
35 |
5 |
8 |
0 |
0 |
NA 475 A
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6 |
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1.40 |
1.66 |
15.0 |
1.21 |
0.01 |
3.5 |
81 |
0 |
1 |
1 |
6 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program