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PDBsum entry 3d5d
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Tunnel analysis for: 3d5d calculated with  MOLE 2.0
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PDB id
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3d5d
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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10 tunnels,
coloured by tunnel radius |
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5 tunnels,
coloured by
tunnel radius
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5 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.19 |
2.12 |
19.7 |
1.35 |
0.64 |
7.4 |
69 |
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1 |
2 |
0 |
7 |
1 |
1 |
0 |
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2 |
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1.35 |
1.53 |
16.4 |
1.18 |
0.15 |
3.0 |
86 |
1 |
0 |
3 |
6 |
0 |
0 |
0 |
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3 |
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1.21 |
3.24 |
15.5 |
1.19 |
0.27 |
1.7 |
76 |
0 |
0 |
1 |
7 |
2 |
0 |
0 |
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4 |
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1.23 |
1.54 |
15.8 |
-1.63 |
-0.44 |
18.6 |
84 |
3 |
1 |
2 |
3 |
0 |
1 |
0 |
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5 |
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1.20 |
1.27 |
16.3 |
-0.71 |
-0.45 |
14.4 |
83 |
3 |
0 |
0 |
1 |
0 |
0 |
0 |
G 1500 A C 1501 A C 1502 A U 1503 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program