PDBsum entry 3d04 Go to PDB code:  Tunnel analysis for: 3d04 calculated with MOLE 2.0 PDB id 3d04 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.19 3.05 55.7 -1.78 -0.35 13.6 80 0 5 9 5 3 6 0   2 1.13 2.64 59.4 -1.97 -0.41 15.1 77 0 5 7 5 4 7 0   3 1.12 2.62 60.6 -2.10 -0.46 16.5 78 0 6 8 5 4 7 0   4 1.20 3.07 62.4 -1.87 -0.36 14.4 79 2 6 8 5 3 6 0   5 1.12 3.03 63.4 -2.37 -0.51 16.2 78 2 6 8 0 4 6 0   6 1.20 1.19 65.8 -2.39 -0.49 15.9 79 2 5 9 0 4 6 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.