PDBsum entry 3b8s Go to PDB code:  Tunnel analysis for: 3b8s calculated with MOLE 2.0 PDB id 3b8s Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   6 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.23 1.23 19.4 -0.82 -0.02 10.9 72 1 2 1 2 4 1 0   2 1.32 1.83 23.8 -1.73 0.31 24.5 66 2 4 0 2 4 0 0   3 1.32 1.83 25.3 -1.27 0.30 21.4 72 2 4 0 3 4 0 0   4 1.13 2.50 31.1 -2.26 -0.21 33.7 75 3 7 0 3 3 0 0   5 1.16 1.55 36.7 -0.47 -0.07 9.6 69 0 4 2 3 6 1 0   6 2.08 2.27 17.3 -2.70 -0.65 25.4 79 3 1 1 0 1 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.