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PDBsum entry 3b6f

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Top Page protein dna_rna metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 3b6f calculated with MOLE 2.0 PDB id
3b6f
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.20 1.24 20.4 0.67 0.29 12.4 84 2 0 0 7 0 0 0  
2 1.32 1.49 23.5 1.86 0.48 5.7 84 1 2 1 10 0 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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