PDBsum entry 3ad8 Go to PDB code:  Pore analysis for: 3ad8 calculated with MOLE 2.0 PDB id 3ad8 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   12 pores, coloured by radius 18 pores, coloured by radius 18 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.17 1.21 29.0 0.11 -0.44 5.0 91 0 2 1 6 0 1 0  NAD 965 A 2 1.79 3.85 33.7 -2.94 -0.18 36.8 78 11 5 2 2 3 0 0  FMN 406 B SO4 2511 B 3 1.95 3.02 35.9 0.70 0.54 12.7 77 3 4 0 7 5 0 0  SO4 2500 A 4 1.87 2.21 38.8 -2.02 -0.37 29.4 79 8 7 0 2 1 0 0   5 1.58 1.75 42.7 -1.54 -0.37 21.8 81 6 3 1 3 2 1 0   6 1.17 1.21 46.3 -1.07 -0.51 15.6 88 4 4 2 4 1 2 0  NAD 965 A 7 1.59 1.71 54.1 -1.96 -0.27 28.5 74 9 7 0 3 4 0 0   8 1.89 2.22 57.7 -1.76 -0.39 27.1 80 10 10 0 4 1 0 0   9 1.61 1.74 63.8 -1.50 -0.39 22.8 82 8 7 1 5 2 1 0   10 1.32 1.32 73.2 -1.34 -0.37 18.9 87 10 7 6 8 1 1 0  SO4 2504 A 11 1.87 2.22 74.4 -0.61 -0.06 18.3 78 10 8 0 8 6 0 0  SO4 2500 A 12 1.31 1.48 75.8 -1.86 -0.44 21.0 85 13 4 5 3 2 3 0  FMN 406 B SO4 2511 B 13 1.34 2.11 79.0 -1.93 -0.61 20.2 86 7 8 7 4 0 2 0   14 1.34 1.34 97.3 -1.24 -0.43 18.3 86 9 6 5 9 1 1 0  SO4 2504 A 15 1.36 2.12 103.5 -1.71 -0.54 21.1 85 9 12 7 6 1 2 0   16 1.33 1.33 109.4 -0.69 -0.17 15.2 84 9 8 6 14 6 1 0  SO4 2500 A 17 1.35 1.35 110.1 -1.45 -0.40 19.3 84 11 8 6 10 3 2 0  SO4 2504 A 18 1.35 2.12 113.0 -2.00 -0.54 22.3 82 10 10 7 5 3 2 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.