PDBsum entry 2y04 Go to PDB code:  Pore analysis for: 2y04 calculated with MOLE 2.0 PDB id 2y04 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 8 pores, coloured by radius 8 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.51 3.17 27.1 -0.19 0.19 17.9 81 2 2 1 5 2 0 1  2CV 501 A 2CV 503 A Y01 401 B 2CV 505 B 2 2.97 3.75 32.5 3.46 1.42 1.8 78 1 0 0 11 4 0 0  2CV 503 A Y01 401 B 3 1.43 1.79 33.0 -0.42 -0.02 11.7 75 2 3 4 2 5 0 2  68H 601 B 4 2.95 4.28 38.4 0.13 0.33 13.5 76 1 3 1 10 3 0 0  2CV 504 B 5 1.43 1.79 45.3 0.46 0.36 6.2 70 1 2 2 9 7 0 2  2CV 504 B 68H 601 B 6 2.25 3.19 51.6 1.06 0.71 7.7 76 2 1 1 12 4 0 1  Y01 401 A Y01 402 A 2CV 505 A 2CV 501 B 2CV 503 B 7 1.32 1.51 61.5 -0.51 -0.10 11.5 72 3 4 5 4 6 0 4  2CV 501 A 68H 601 A Y01 401 B 2CV 505 B 8 1.69 3.68 68.0 1.57 0.87 1.5 74 0 1 1 16 6 2 2  Y01 402 A 2CV 501 A 2CV 505 A 2CV 501 B 2CV 505 B Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.