PDBsum entry 2y04 Go to PDB code:  Tunnel analysis for: 2y04 calculated with MOLE 2.0 PDB id 2y04 Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   1 tunnel, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.33 1.52 32.1 1.32 0.43 6.3 78 0 3 2 6 6 0 0  2CV 504 A 68H 601 A 2 1.16 2.56 33.2 1.34 0.50 7.2 80 0 3 3 4 6 0 0  68H 601 A 3 1.31 1.51 34.0 0.95 0.45 5.9 72 1 2 3 3 8 0 3  68H 601 A 4 1.32 1.51 38.1 0.09 0.11 9.6 84 2 2 4 3 6 0 0  68H 601 A Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.