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PDBsum entry 2www

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Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 2www calculated with MOLE 2.0 PDB id
2www
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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8 tunnels, coloured by tunnel radius 9 tunnels, coloured by tunnel radius 9 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.10 1.10 28.9 1.37 0.80 7.0 70 2 1 1 8 4 0 0  2PE 500 C
2 1.70 1.99 20.5 -0.74 -0.23 15.1 75 2 1 2 4 0 1 0  
3 1.72 1.96 25.6 -0.46 -0.17 14.6 77 2 2 3 4 0 1 0  
4 1.77 1.96 26.6 -1.43 -0.49 19.2 78 2 4 3 4 0 1 0  
5 1.39 1.46 22.0 -0.26 -0.10 10.6 77 2 0 2 4 0 1 0  
6 1.38 1.42 27.5 -0.84 -0.33 12.5 75 2 2 3 5 0 1 0  
7 1.04 2.30 35.2 -0.20 0.19 7.9 74 2 2 5 8 1 1 0  
8 1.27 1.32 15.8 0.32 0.23 9.0 75 1 0 0 6 1 2 0  
9 1.27 1.32 20.1 0.44 0.12 8.9 79 1 0 1 5 0 2 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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