PDBsum entry 2vyc Go to PDB code:  Pore analysis for: 2vyc calculated with MOLE 2.0 PDB id 2vyc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   43 pores, coloured by radius 33 pores, coloured by radius 33 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.55 5.69 35.5 -2.43 -0.63 24.8 82 4 4 4 1 0 2 0   2 1.53 1.75 69.2 -2.12 -0.55 25.3 87 10 5 6 2 1 1 0   3 1.89 1.98 72.0 -1.92 -0.49 20.4 82 6 7 8 5 2 3 0   4 1.95 1.96 101.8 -1.49 -0.38 15.3 85 8 4 12 8 2 4 0   5 1.23 1.30 108.9 -1.71 -0.62 16.1 82 9 6 6 5 1 5 0   6 1.29 2.24 122.6 -2.15 -0.50 27.8 82 12 12 7 8 4 0 0   7 1.56 2.87 138.0 -1.71 -0.46 21.7 76 10 11 7 9 6 3 0   8 1.35 2.30 176.6 -1.27 -0.36 17.6 85 12 8 15 18 3 1 0   9 1.23 2.39 191.9 -1.10 -0.35 14.9 81 10 7 15 19 5 4 0   10 1.21 1.21 208.7 -0.68 -0.23 10.7 82 11 6 15 20 8 3 0  PLP 1386 F 11 1.50 2.95 195.5 -1.74 -0.50 20.8 79 12 11 10 10 5 4 0   12 1.91 1.92 235.9 -1.34 -0.34 14.8 82 17 8 20 19 8 5 0  PLP 1386 F 13 2.60 2.59 29.3 -1.41 -0.39 14.3 80 3 3 3 4 1 2 0   14 2.99 3.72 29.3 -3.02 -0.69 27.6 81 5 3 3 0 0 1 0   15 2.95 3.25 32.4 -2.28 -0.68 18.1 75 4 3 3 1 1 4 0   16 2.29 2.95 34.4 -2.61 -0.73 19.3 85 2 3 6 1 1 1 0   17 1.41 1.45 60.3 -1.32 -0.30 25.1 78 5 6 3 4 4 0 0   18 1.81 1.81 62.2 -1.98 -0.50 21.9 81 7 6 7 3 2 1 0   19 2.06 2.05 65.2 -2.19 -0.49 26.2 84 8 7 8 4 2 0 0   20 2.10 2.07 66.2 -2.10 -0.52 25.5 81 7 8 7 4 2 2 0   21 1.37 1.58 95.0 -1.71 -0.53 23.7 84 7 7 5 4 2 0 0   22 1.37 1.39 104.5 -0.81 -0.31 13.7 79 6 7 5 8 4 1 0   23 2.20 2.30 108.3 -0.99 -0.31 13.1 88 7 4 9 8 2 0 0   24 2.03 2.52 108.4 -2.44 -0.57 27.3 80 9 12 7 4 2 2 0   25 1.78 3.11 110.1 -1.55 -0.29 19.9 75 9 7 8 8 8 2 0   26 1.98 2.52 111.9 -1.89 -0.46 22.5 82 7 10 8 8 3 0 0   27 1.78 1.78 117.0 -1.06 -0.15 12.6 78 9 4 10 10 8 2 0   28 2.07 2.39 121.6 -1.40 -0.42 18.0 87 7 9 9 7 1 0 0   29 1.21 1.28 143.2 -1.45 -0.43 17.2 82 9 10 10 9 5 2 0  PLP 1386 A 30 1.76 1.75 149.8 -1.07 -0.27 13.9 77 10 5 6 10 7 2 0   31 1.29 1.38 154.3 -0.93 -0.36 10.9 81 8 8 10 12 5 3 0  PLP 1386 A 32 2.16 2.16 237.5 -1.94 -0.53 23.6 85 14 21 13 9 3 1 0   33 1.23 1.91 260.0 -0.87 -0.40 15.6 86 9 15 12 20 3 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.