PDBsum entry 2vtb

Tunnel analysis for: 2vtb calculated with

MOLE 2.0

PDB id

2vtb

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

19 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.22

2.40

16.6

0.05

0.26

11.4

69

1

3

0

2

4

0

0

CL 1499 B

2

1.16

1.18

22.9

0.80

0.40

5.0

77

2

1

2

7

3

1

0

3

1.16

1.19

26.4

0.12

0.19

10.2

80

2

2

3

6

2

1

0

4

1.19

1.48

23.3

0.53

0.29

3.8

76

1

1

0

6

3

2

0

5

1.19

1.48

24.7

0.31

0.26

8.3

79

2

1

1

6

2

1

0

6

1.22

1.46

17.6

0.67

0.04

6.2

78

1

1

1

6

1

1

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.