PDBsum entry 2qqk

Tunnel analysis for: 2qqk calculated with

MOLE 2.0

PDB id

2qqk

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

7 tunnels, coloured by tunnel radius

7 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.29

1.29

19.8

-0.38

-0.31

5.2

86

1

1

2

2

1

1

0

2

1.35

1.70

26.1

-0.61

-0.07

14.7

80

3

2

2

5

1

1

0

3

1.34

1.35

30.8

-0.79

-0.46

8.4

86

2

1

2

1

1

1

0

4

1.35

1.36

34.3

-0.69

-0.44

7.0

85

1

2

3

2

2

1

0

5

1.46

3.73

22.6

-0.94

-0.69

4.5

100

1

0

8

1

1

0

0

6

2.00

2.04

15.0

-0.32

0.05

18.6

81

2

1

0

4

1

1

0

7

1.94

2.14

15.7

-0.46

0.17

17.5

84

2

1

0

4

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.