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PDBsum entry 2qb9
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Tunnel analysis for: 2qb9 calculated with  MOLE 2.0
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PDB id
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2qb9
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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13 tunnels,
coloured by tunnel radius |
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13 tunnels,
coloured by
tunnel radius
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13 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.16 |
1.17 |
58.3 |
-1.27 |
-0.31 |
16.6 |
83 |
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7 |
0 |
2 |
5 |
2 |
0 |
0 |
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U 662 A A 663 A A 665 A A 718 A C 719 A C 720 A G
721 A G 734 A C 735 A C 736 A LLL 2358 A
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2 |
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1.18 |
1.19 |
72.8 |
-0.40 |
-0.41 |
7.4 |
82 |
2 |
0 |
1 |
4 |
2 |
0 |
0 |
A 665 A G 667 A G 669 A G 670 A G 671 A U 672 A G
713 A G 714 A A 715 A A 718 A C 719 A C 720 A G
721 A G 733 A G 734 A C 735 A C 736 A C 806 A LLL
2358 A
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3 |
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1.18 |
1.18 |
77.3 |
-0.78 |
-0.32 |
13.8 |
85 |
6 |
0 |
2 |
6 |
2 |
0 |
0 |
A 665 A A 718 A C 719 A C 720 A G 721 A G 722 A U
723 A G 734 A C 735 A A 831 A G 832 A G 833 A U
834 A C 856 A
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4 |
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1.17 |
1.18 |
78.7 |
-0.76 |
-0.46 |
11.4 |
81 |
6 |
0 |
1 |
4 |
2 |
0 |
0 |
A 665 A G 667 A G 668 A G 669 A G 670 A A 718 A C
719 A C 720 A G 721 A C 732 A G 733 A G 734 A C
735 A C 736 A C 764 A G 765 A A 766 A A 767 A C
806 A A 807 A G 809 A C 810 A C 811 A LLL 2358 A
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5 |
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1.18 |
1.18 |
92.0 |
-0.57 |
-0.50 |
8.3 |
85 |
3 |
0 |
2 |
4 |
2 |
0 |
0 |
U 653 A G 654 A U 657 A C 658 A U 659 A C 660 A G
661 A U 662 A G 664 A A 665 A G 666 A G 667 A A
718 A C 719 A C 720 A G 721 A G 733 A G 734 A C
735 A C 736 A C 737 A C 738 A U 740 A C 744 A G
745 A A 746 A A 747 A G 748 A G 851 A LLL 2358 A
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6 |
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1.20 |
1.65 |
23.5 |
1.04 |
0.45 |
8.4 |
86 |
2 |
0 |
1 |
7 |
1 |
0 |
0 |
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7 |
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1.14 |
1.14 |
32.5 |
1.91 |
0.47 |
2.8 |
87 |
1 |
1 |
0 |
10 |
3 |
0 |
0 |
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8 |
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1.32 |
1.34 |
15.6 |
-1.57 |
-0.67 |
18.8 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
A 412 A G 413 A A 414 A G 424 A G 425 A U 426 A U
427 A G 428 A
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9 |
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1.34 |
1.36 |
16.0 |
-1.64 |
-0.66 |
19.7 |
72 |
1 |
0 |
0 |
0 |
0 |
0 |
0 |
G 413 A A 414 A A 415 A G 416 A G 424 A G 425 A U
426 A U 427 A G 428 A
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10 |
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1.13 |
2.79 |
23.7 |
2.63 |
0.80 |
4.0 |
89 |
1 |
2 |
0 |
10 |
0 |
0 |
0 |
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11 |
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1.13 |
3.30 |
24.1 |
1.83 |
0.56 |
3.6 |
86 |
0 |
3 |
1 |
8 |
0 |
1 |
0 |
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12 |
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1.25 |
1.33 |
16.8 |
2.06 |
0.40 |
1.5 |
75 |
0 |
1 |
2 |
6 |
2 |
0 |
0 |
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13 |
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1.12 |
1.12 |
17.8 |
-2.77 |
-0.63 |
23.8 |
96 |
2 |
0 |
3 |
0 |
0 |
0 |
0 |
G 688 A C 689 A G 690 A G 691 A A 696 A
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program