PDBsum entry 2oa6

Lyase

PDB id: 2oa6

Contents

Protein chains

295 a.a. *

Ligands

BME ×4

POP

GOL

Metals

_MG ×3

Waters ×236

* Residue conservation analysis

PDB id:

2oa6

Name:

Lyase

Title:

Aristolochene synthase from aspergillus terreus complexed with pyrophosphate

Structure:

Aristolochene synthase. Chain: a, b, c, d. Engineered: yes

Source:

Aspergillus terreus. Organism_taxid: 33178. Gene: ari1. Expressed in: escherichia coli. Expression_system_taxid: 562.

Resolution:

2.15Å R-factor: 0.229 R-free: 0.273

Authors:

E.Y.Shishova,L.Di Costanzo,D.E.Cane,D.W.Christianson

Key ref:

E.Y.Shishova et al. (2007). X-ray crystal structure of aristolochene synthase from Aspergillus terreus and evolution of templates for the cyclization of farnesyl diphosphate. Biochemistry, 46, 1941-1951. PubMed id: 17261032

Date:

15-Dec-06 Release date: 30-Jan-07

Protein chains

Q9UR08  (ARIS_ASPTE) -  Aristolochene synthase from Aspergillus terreus

Seq: 320 a.a.

Struc: 295 a.a.

Enzyme reactions

• Enzyme class: E.C.4.2.3.9 - aristolochene synthase.
• Pathway: Germacrene derived sesquiterpenoid biosynthesis
• Reaction: (2E,6E)-farnesyl diphosphate = ⁺-aristolochene + diphosphate

(2E,6E)-farnesyl diphosphate = (+)-aristolochene + diphosphate (Bound ligand (Het Group name = POP) corresponds exactly)

• Cofactor: Mg(2+); Mn(2+)

Molecule diagrams generated from .mol files obtained from the KEGG ftp site

reference

Biochemistry 46:1941-1951 (2007)

PubMed id: 17261032

X-ray crystal structure of aristolochene synthase from Aspergillus terreus and evolution of templates for the cyclization of farnesyl diphosphate.

E.Y.Shishova, L.Di Costanzo, D.E.Cane, D.W.Christianson.

ABSTRACT

Aristolochene synthase from Aspergillus terreus catalyzes the cyclization of the universal sesquiterpene precursor, farnesyl diphosphate, to form the bicyclic hydrocarbon aristolochene. The 2.2 A resolution X-ray crystal structure of aristolochene synthase reveals a tetrameric quaternary structure in which each subunit adopts the alpha-helical class I terpene synthase fold with the active site in the "open", solvent-exposed conformation. Intriguingly, the 2.15 A resolution crystal structure of the complex with Mg2+3-pyrophosphate reveals ligand binding only to tetramer subunit D, which is stabilized in the "closed" conformation required for catalysis. Tetramer assembly may hinder conformational changes required for the transition from the inactive open conformation to the active closed conformation, thereby accounting for the attenuation of catalytic activity with an increase in enzyme concentration. In both conformations, but especially in the closed conformation, the active site contour is highly complementary in shape to that of aristolochene, and a catalytic function is proposed for the pyrophosphate anion based on its orientation with regard to the presumed binding mode of aristolochene. A similar active site contour is conserved in aristolochene synthase from Penicillium roqueforti despite the substantial divergent evolution of these two enzymes, while strikingly different active site contours are found in the sesquiterpene cyclases 5-epi-aristolochene synthase and trichodiene synthase. Thus, the terpenoid cyclase active site plays a critical role as a template in binding the flexible polyisoprenoid substrate in the proper conformation for catalysis. Across the greater family of terpenoid cyclases, this template is highly evolvable within a conserved alpha-helical fold for the synthesis of terpene natural products of diverse structure and stereochemistry.